Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0838 ATGTCTTCCAGAAGATCCTCCTCCTCCTCCCGTTCTAGACAATCCGGTGCTTCCTCTGATATCACTGAAGCTCAGATCAATGACCTTGTCTCCAAGTTACAACAACTCATCCCTGAGCTTCGTGCTCCTCGTCGTTCCGACAAGGCTTCTGCTTCAAAGGTGTTACAAGAGACTTGTAACTACATCAAGAGCTTGCACAGAGAAGTTGATGACCTAAGTGAGAGACTTTCTGAGCTCTTGGCCAACACTGACTCCAACAGTGCCCAAGCCGCCATTATTAGGAGCCTTCTTATGTAA 297 0.4747 MSSRRSSSSSRSRQSGASSDITEAQINDLVSKLQQLIPELRAPRRSDKASASKVLQETCNYIKSLHREVDDLSERLSELLANTDSNSAQAAIIRSLLM 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0838 98 MobiDBLite consensus disorder prediction 1 21 - -
Alju09g0838 98 Pfam Helix-loop-helix DNA-binding domain 25 66 IPR011598 GO:0046983
Alju09g0838 98 PANTHER TRANSCRIPTION FACTOR PRE 1 98 IPR044293 GO:0006355|GO:0040008|GO:0046983
Alju09g0838 98 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 65 IPR011598 GO:0046983
Alju09g0838 98 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 87 IPR036638 GO:0046983
Alju09g0838 98 Gene3D - 23 94 IPR036638 GO:0046983
Alju09g0838 98 FunFam Transcription factor ILI6 11 94 - -
Alju09g0838 98 Coils Coil 62 82 - -
Alju09g0838 98 CDD bHLH_AtPRE_like 21 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0838 Alju-ChrAlju09 20853377 20854226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0838 21 97 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 76.623 9.52e-37 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g0838 HLH 6e-07 No_clan