Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0811 ATGGAGCTTGCAACTGTAAAAACTGAATTCTACCCAAGAAACCATAGGATGTTCATGATGGAAGCCGGAAATATTGACATAAAGTGCACGAAAAGGAGGCTAAGAGACTCATCGGTGGCAGTTTTAGAGGGCAATGAGAAACAAGAGCAACCACAGCAGGGTGGTCAATCAACTACTACAACTACTGTCAAGAGAAGCTCAAGGTTTCGTGGAGTTAGCAGACATAGATGGACAGGGAGATATGAAGCTCATTTATGGGACAAAGGGACTTGGAATCCAACTCAAAAGAAGAAAGGGAAGCAAGGAGCTTATGCTGATGAAGAAGCTGCTGCTAGAGCATATGATTTGGCTGCACTCAAGTACTGGGGAACTTCTACCTTCACAAACTTCCCTGTATCTAATTATGAGAACGAGATTGAGATAATGAAAACTATGACAAAAGAAGAATATCTTGCTTCTTTAAGAAGAAGAAGCAGTGGCTTTTCCAGAGGAGTATCAAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGAATAGGGAGAGTGTTTGGTAACAAGTACCTCTACCTTGGCACTTACAGTACGCAAGAAGAGGCTGCTCGTGCATATGATATAGCAGCTATAGAATACAGAGGCTTGAACGCAGTAACAAACTTTGATTTGAGCACATATATTAGATGGCTGAGACCTGAAGCCCTTAATACTACTCCTCAAGAACAACAACAGAACCCAGAATTTCACAATCTCATGACGAACCCTAGCCTCACCCAAACCAGAGAAATCGCTAAGGTACCTAATTTCAATCGCAATCCAAATGAGCAACATATACCTCAGTATTCAACCTCTTTATGTTATAGTAATAGTGCCAAGTCATCGTCTTCTCCGACAGCATTAGGGCTTCTGCTGAAATCGTCAGTGTTCAGAGAGCTAATGCAGAAAAATATGAATCAGGGGAAACGTGAAGAAGAACAAGAAGGAAGTAATAGGTTTGCTTACTTGCACTCTTCCCATGGCGCAATAGAATACCAAATTTACAGTTACCGGAAGAGAAAGCATTGCCGCCACAGTATCATAGAACTGGGCAATCTGCATAGGATGGGTGCTTTCAACGAATGTGACTTTTCTTATTTGAGATTTGCATAA 1158 0.418 MELATVKTEFYPRNHRMFMMEAGNIDIKCTKRRLRDSSVAVLEGNEKQEQPQQGGQSTTTTTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYADEEAAARAYDLAALKYWGTSTFTNFPVSNYENEIEIMKTMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGLNAVTNFDLSTYIRWLRPEALNTTPQEQQQNPEFHNLMTNPSLTQTREIAKVPNFNRNPNEQHIPQYSTSLCYSNSAKSSSSPTALGLLLKSSVFRELMQKNMNQGKREEEQEGSNRFAYLHSSHGAIEYQIYSYRKRKHCRHSIIELGNLHRMGAFNECDFSYLRFA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0811 385 MobiDBLite consensus disorder prediction 42 71 - -
Alju09g0811 385 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 MobiDBLite consensus disorder prediction 43 67 - -
Alju09g0811 385 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677
Alju09g0811 385 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Alju09g0811 385 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700|GO:0006355
Alju09g0811 385 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Alju09g0811 385 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677
Alju09g0811 385 CDD AP2 166 227 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 Pfam AP2 domain 67 123 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 Pfam AP2 domain 166 217 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 292 - -
Alju09g0811 385 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Alju09g0811 385 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0811 Alju-ChrAlju09 18286703 18289230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0811 64 229 AP2-EREBP Transcription Factor Family AT5G57390 70.414 1.29e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju09g0811 AP2 1.2e-07 CL0081