LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g0798	ATGGCGGCAGGTGGAAAACTCTTTGGGGCATCCAATATGACAACACTCTTTCTCCAAAACGAAAGACTTCCTCCCTCTTCTGATGTTCTTGACTCTATCTGGGCTCACACCTCAAATCCCACTTTCCCAGGACCAAAATCCATGGTGAATTTTGAGAGACTGAGTGGCTGCAGAGTAACAGACCGGCCATTTCTTCATGGAATGGAGAAAGAAGAGACAGGGGAGGAAGATTACGAGGTATGCTTTCATCAAGCTGGGAAGAAGAGGAGGCTCACGAGCGAGCAAGTTCAGTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTAGAACCAGAGAGGAAGGTTCAGCTAGCGAAGGAGCTAGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAGAACAGAAGGGCAAGGTTCAAGACCAAACAGCTTGAGCAAGACTATGGCAAATTGAAAGCTAGCTATGATAAACTCAAGAGTGATCATGACAATCTTGCCAAGGAGAACGACAAGTTAAAAGAAGAGGTGAAAGCCCTAAAAAACAGGTTGAAAGGGAGAGAAAAAGAGAAAGAAGATTCTCACAAAGCAGAGGCCAATGCAGATCCTGGAGATTCAGAAGCAGTGAATTCGGCAGAAGGAGAGCCACAGAACGATGGAACCAAAGACGAAGGAGCAGCGCCAAAGGGGATAACGGTGTGGAAGCAGCAGGAAGACGCGAATTCATCGGCGAAAAGCGACGTGTTGGATTCGGAGGACACGGAGGCGAACCACCATTCGTGGATGCAGCAGGAGCCAGCGGATTCGTCGCCGGCGGCGGAAGCTGAAGCTGAAGCCGCGGAACACTCGGATTTCTCGCAGGACGAAGAAGACGAAAACCTCATGAGGAGCAATCTGCTGAATCTGGCGTGCTTTCCGAAGGTGGAAGAAGATGGATGCTACGACGATCCTCCGGAAGGTTGTTGTAACAATTTTGGATTCCCTGTTGAAGACCACACCTTCTGTTTTTGGCCTTACTGA	1017	0.4926	MAAGGKLFGASNMTTLFLQNERLPPSSDVLDSIWAHTSNPTFPGPKSMVNFERLSGCRVTDRPFLHGMEKEETGEEDYEVCFHQAGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQDYGKLKASYDKLKSDHDNLAKENDKLKEEVKALKNRLKGREKEKEDSHKAEANADPGDSEAVNSAEGEPQNDGTKDEGAAPKGITVWKQQEDANSSAKSDVLDSEDTEANHHSWMQQEPADSSPAAEAEAEAAEHSDFSQDEEDENLMRSNLLNLACFPKVEEDGCYDDPPEGCCNNFGFPVEDHTFCFWPY	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g0798	338	PRINTS	Lambda-repressor HTH signature	113	122	IPR000047	GO:0003677
	Alju09g0798	338	PRINTS	Lambda-repressor HTH signature	122	138	IPR000047	GO:0003677
	Alju09g0798	338	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	73	262	IPR045224	GO:0003700
	Alju09g0798	338	FunFam	Homeobox-leucine zipper protein HAT5	80	144	-	-
	Alju09g0798	338	ProSiteProfiles	'Homeobox' domain profile.	82	142	IPR001356	GO:0003677
	Alju09g0798	338	CDD	homeodomain	87	143	IPR001356	GO:0003677
	Alju09g0798	338	Coils	Coil	141	189	-	-
	Alju09g0798	338	Gene3D	-	90	136	-	-
	Alju09g0798	338	ProSitePatterns	'Homeobox' domain signature.	117	140	IPR017970	GO:0000981\|GO:0006355
	Alju09g0798	338	SUPERFAMILY	Homeodomain-like	76	144	IPR009057	-
	Alju09g0798	338	SMART	HOX_1	85	146	IPR001356	GO:0003677
	Alju09g0798	338	MobiDBLite	consensus disorder prediction	244	258	-	-
	Alju09g0798	338	Pfam	Homeobox associated leucine zipper	142	183	IPR003106	GO:0006355\|GO:0043565
	Alju09g0798	338	Gene3D	-	137	184	-	-
	Alju09g0798	338	MobiDBLite	consensus disorder prediction	181	201	-	-
	Alju09g0798	338	Pfam	Homeodomain	87	140	IPR001356	GO:0003677
	Alju09g0798	338	MobiDBLite	consensus disorder prediction	181	292	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g0798	Alju-ChrAlju09	17403588	17405337	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g0798	44	187	Homeobox Transcription Factor Family	AT3G01470	54.167	7.35e-44	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Alju09g0798		Homeodomain	2.2e-16	CL0123