Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0760 ATGAAAGAAAGCAATGGTCATAGCATTGCATGGGACGACGATGCGAGCGTAGTGTGTATGGCTCGTAGGAGTTCAAAGGGCACGGCAAGTGAAATGGTTTGGTTTCTTTGTTGTCTTAGCTTTTCAATTGCTTTGTTGGTTGTTGGGAGGCAGGGTTTCTTCTCACTGCTTGTTTATGTCTACCTTTTGTTAAGGATGGGCAGGGTAAAGCTCAAGATTAAGAGACTGGAGAATACCAATGGTCGCCAGGCCACTTTTGCTAAAAGAAAGAATGGAATCATAAAGAAGGCTACTGAGTTATCAATATTGTGCGATATAGATATAATTCTGCTCATGTTCTCACCATCTGGCAAGCCCTCATTGTGCAGAGGACTACGCAGTAACATGGAGGAGGTTATTGAGAAGTTTGCACAATTAACTCCACAGGAAAGGGCAAAACGGAAGTTGGAGAGTCTGGAAGCACTGAAAAAAACATTTCGGAAGTTAGACCATGATGTCAATATACAAGAATTTCTGGGTACATGTAGTCAAACTAAAGAGGACCTAATAAATCAATCCAGGTTATTGCAAACTCAAATTTCTGAAATACATAATAGATTGAGCTGTTGGACTGAACCTGACAAAATAAACAATGTGGAACAATTAGTACAAATGGAAAATTCAATTAGGGAGTCACTCAATAACATTCGAATACGGAAGGAAAATATACAAAAGCAGCAACTTGCGAGATTGGAATGCACTAACCAGTTCAATGAGATGCAGATCCCCTACAGAATGAGTACTGATCAACATCTTCAATCACTTTCATGGGTTCCTAATAATGACGGTCAACATATAGTTTTACCTGAGGACTCTGACTTGCTTCTTCACAAAGAACTTGAGTGCTCTGCAAGCTCTTCTTTTGGGAGTTATGCTAGTTATCTTGGCTCAAGTACAAAAACAGAAATGTCTAGTTCTGGACAAGAAAATGGTGTCATCAGTGATTTGACCAATAATGCTCCTGTGAGACTACAATTCGGGCAGTTTCAATATGGACTACCACCATACAATTACAATTTACTGAATGACACAAGGTTCCAACCAGCTGTGGAGATGAACCCACATGAAAATCCATTAGATTATCGCGTTAATGGAAGCTTTGAAGCCCCTCAACCTGATTATGAAAATAACCACCATGGATGGGCTTCCACATCAGGGTCTGGTGCCGCAACTTTGTTTGATGAGCATTTGTATGCCCAGCAACCAAACTGGTCACTCCAGTCATCAGATAATGATGTTGTTTTAGAACTTCAGTCATGCCTGTGA 1305 0.4046 MKESNGHSIAWDDDASVVCMARRSSKGTASEMVWFLCCLSFSIALLVVGRQGFFSLLVYVYLLLRMGRVKLKIKRLENTNGRQATFAKRKNGIIKKATELSILCDIDIILLMFSPSGKPSLCRGLRSNMEEVIEKFAQLTPQERAKRKLESLEALKKTFRKLDHDVNIQEFLGTCSQTKEDLINQSRLLQTQISEIHNRLSCWTEPDKINNVEQLVQMENSIRESLNNIRIRKENIQKQQLARLECTNQFNEMQIPYRMSTDQHLQSLSWVPNNDGQHIVLPEDSDLLLHKELECSASSSFGSYASYLGSSTKTEMSSSGQENGVISDLTNNAPVRLQFGQFQYGLPPYNYNLLNDTRFQPAVEMNPHENPLDYRVNGSFEAPQPDYENNHHGWASTSGSGAATLFDEHLYAQQPNWSLQSSDNDVVLELQSCL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0760 434 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 75 119 IPR002100 GO:0003677|GO:0046983
Alju09g0760 434 SMART madsneu2 66 125 IPR002100 GO:0003677|GO:0046983
Alju09g0760 434 FunFam Agamous-like MADS-box protein AGL30 79 161 - -
Alju09g0760 434 Coils Coil 142 162 - -
Alju09g0760 434 ProSiteProfiles MADS-box domain profile. 66 118 IPR002100 GO:0003677|GO:0046983
Alju09g0760 434 SUPERFAMILY SRF-like 67 158 IPR036879 GO:0003677|GO:0046983
Alju09g0760 434 PANTHER SERUM RESPONSE FACTOR HOMOLOG 68 275 - -
Alju09g0760 434 PRINTS MADS domain signature 68 88 IPR002100 GO:0003677|GO:0046983
Alju09g0760 434 PRINTS MADS domain signature 103 124 IPR002100 GO:0003677|GO:0046983
Alju09g0760 434 PRINTS MADS domain signature 88 103 IPR002100 GO:0003677|GO:0046983
Alju09g0760 434 Gene3D - 79 161 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0760 Alju-ChrAlju09 13663713 13669638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0760 66 416 Type I MADS-box Gene Family AT2G03060 50.518 3.39e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju09g0760 SRF-TF 1.7e-18 No_clan