Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0633 ATGGAGTTCAATCCACCAGAGACCTCTTCTCAACAAAAGAGAAATCCCAAGAGAAAACGAAGCCGGGAAGACCCAGAGCTTGAACGCCTGAACTCATTGTCGTGGAACCCCTCTCTTTCTGAAAATGATGGTCCCTTTTCTTTGGTTGTAGGCTCAAATGAACTTGAAGGAGGTTTCCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTTTAGAAATTCCTGATCCCAAAGAAGACAAGAGGAAGAAGAAGTCTAAAAATAAAGCAGATTTGAAGAAACAGAAGCTAAGTGAAGTAGAGGGTGCCTGTAATGACGAGGTTGGGGTGAATTTTGAAGAAAACAAGGATGAGAGTGTGATGACTATAAAGAAGGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGGAGGAGGAGGAGGTGGAGGGGGAGGAAGCTGCTGATCAAGTTGTTAATGTGAAAGATGATAATGATGAAGAAGACATTGATGAAATGGAATTTTATGCATGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATTTACAAGCTTGGGTTCAAGGAACCCACACCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACTCTTGCCTTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGAGAGAAGGCTGCAAAGATGGTTGAACAAAGGTGTGAAGAACCTGACAAATATGCTCCTTCTGGCGTTCTAAGGGCTCTCATAATTGCTCCAACTAGGGAACTTGCACTGCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATATATCAATGTTAGGGTGACTCCTATAGTTGGGGGCATTTTGGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCGGAGATTATTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTTGTCGAGTTACATTCCTTGTCATTCTTTGTGCTCGATGAGGCTGATCGAATGGTACAAAGTGGACATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGCCCAACACGTCTGGTGTGGATGATCCTCAATCTGCACAAAATTGCATTACAATTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTCTTTTCAGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGTTAAAGCGTGCTTCAACAAAACAAAATCAATCAGTGTTAGATGGATTCAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATGCAGCAGTGATTGATCTCACTAATCCAACAATATTGGCAACCAAGCTAGAAGAATCATTTATTGAATGCAAGGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACTGTCCATAGACAAGGCCAAACAATAGTATTCTGTACATCAATCGCAGCTTTGCGCCATATCTCTTCTCTACTGCGCATTCTTGGCATTAATGCTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGATTAAAGGCTATTGATCGCTTTCGTGAAGATGAAAATGGCATCCTTCTTGCTACTGATGTTGCAGCGAGGGGTCTTGATATTCCTGGTGTTAGGGCGGTTGTCCACTATCAGCTTCCACATTCAGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCCAGGGCTTCTGCCGAAGGGTGCAGCATTGCTTTGATCTCACCAAAAGATACAACAAAGTTTGCTTCATTGTGCAAGTCCTTCTCCAAGGACACTTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTAAAGCGATTGTCTATTGCTCGTCAAATGGACAAAATAACACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCAGTGGAGTTAGTTACGGAAAATTATGACAGTGAGGAGGAAAGAGTGAAGAAATTTAAGCAAATGAAAGCCAGCTCTGCTCAGTTGAAGAAGTTACAGCAGGAGCTCAATGCGCTTCTTTCACGCCCCTTACAATCAAAACAATTTTCGCATAGATACTTAGCAGGGGCGGGGGTCACTCCTCTGATGCAGGAACAGTTCCAACAATTAGCCAAGCAAAAGCAAGGAAGTGCAGGAGTAACTGGCAAGGGCAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCGCTACAGGCTTTACGGAATGCTGGTGAAGAGGTGCGCATGGACGTCAAGAAAATGACAGGAAAGAGGATGGAGAATTTGAAACGAAAGAGAAAAGAAGAGAAAAAACGTTTGCGTGACCAGCGAAGGAAGCAAAAGAGAAAGATGAAAATGGAGAATGAATAG 2412 0.4262 MEFNPPETSSQQKRNPKRKRSREDPELERLNSLSWNPSLSENDGPFSLVVGSNELEGGFLSLEEIDEAEYGLEIPDPKEDKRKKKSKNKADLKKQKLSEVEGACNDEVGVNFEENKDESVMTIKKEKKKKKKKKKKKKKMEEEEEVEGEEAADQVVNVKDDNDEEDIDEMEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAAKMVEQRCEEPDKYAPSGVLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMPNTSGVDDPQSAQNCITISSYQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIEALSERAGMRPNAAVIDLTNPTILATKLEESFIECKEEDKDAYLYYILTVHRQGQTIVFCTSIAALRHISSLLRILGINAWTLHAQMQQRARLKAIDRFREDENGILLATDVAARGLDIPGVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTTKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQMDKITRKDSQEKAQKSWFERNAESVELVTENYDSEEERVKKFKQMKASSAQLKKLQQELNALLSRPLQSKQFSHRYLAGAGVTPLMQEQFQQLAKQKQGSAGVTGKGKLVVIGQDCVEALQALRNAGEEVRMDVKKMTGKRMENLKRKRKEEKKRLRDQRRKQKRKMKMENE 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0633 803 Gene3D - 121 423 IPR027417 -
Alju09g0633 803 Gene3D - 455 705 IPR027417 -
Alju09g0633 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 367 IPR027417 -
Alju09g0633 803 Coils Coil 123 152 - -
Alju09g0633 803 MobiDBLite consensus disorder prediction 71 98 - -
Alju09g0633 803 MobiDBLite consensus disorder prediction 12 29 - -
Alju09g0633 803 Pfam DEAD/DEAH box helicase 197 405 IPR011545 GO:0003676|GO:0005524
Alju09g0633 803 CDD DEADc_DDX24 184 449 - -
Alju09g0633 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 594 IPR027417 -
Alju09g0633 803 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 173 201 IPR014014 GO:0003724
Alju09g0633 803 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 344 352 IPR000629 -
Alju09g0633 803 SMART helicmild6 499 580 IPR001650 -
Alju09g0633 803 Coils Coil 656 696 - -
Alju09g0633 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 620 IPR001650 -
Alju09g0633 803 MobiDBLite consensus disorder prediction 778 795 - -
Alju09g0633 803 Pfam Helicase conserved C-terminal domain 471 579 IPR001650 -
Alju09g0633 803 SMART ultradead3 192 432 IPR014001 -
Alju09g0633 803 CDD SF2_C_DEAD 460 589 - -
Alju09g0633 803 PANTHER RNA HELICASE 130 731 - -
Alju09g0633 803 MobiDBLite consensus disorder prediction 68 98 - -
Alju09g0633 803 MobiDBLite consensus disorder prediction 31 45 - -
Alju09g0633 803 MobiDBLite consensus disorder prediction 1 45 - -
Alju09g0633 803 MobiDBLite consensus disorder prediction 766 803 - -
Alju09g0633 803 Coils Coil 766 803 - -
Alju09g0633 803 MobiDBLite consensus disorder prediction 124 158 - -
Alju09g0633 803 Coils Coil 233 253 - -
Alju09g0633 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 422 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0633 Alju-ChrAlju09 10343692 10359181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0633 174 590 Eukaryotic Initiation Factors Gene Family AT5G11200 29.216 3.31e-41 155