Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0477 ATGGCCATTATCTCACCCTCTAGCCCTCCACAAAGGTTGAGGATGAAAATAGAGGAAGATCAAGGACAGTGTTCATCGTCTTCTCAAGCCATCAACAACATTCAGAGCTATCAAGAACAGCTGATGCTTCACCAAATGATGCAGCAGCAGCAAAACGCTGACGTTTTCGGAGGTAATTCTTCTAATAACAACAACAACAACAACAACGAAAGAGGATTGGGGTTCCCTGAGGTTTCTCCACTCTTTCATCCTCCGCCACCGCCACAGCCGCCATGGTCTCTCCCTCCGGTTCACTCCTTCAACCCGGTCCGAGACACCGACCACCACCACCACCAGTTTTTAGTGCCTCCACCTTCCTCTTCCCTCTACGCTGGCCTCTTCAACCGTAGGGTTAATCCTTCTCTGCAGTTTGCTTACGACGGTCCCTCCAATTCCGACCAACACCATCTCCGGATCATCTCTGACACCCTCGGGGTCGGACCGGTCGTGGGCCAACCCGGTTCAGTAGCCCCCTTCGGCCTCCAAGCCGAGCTGGTGGGCAAGATGACGGCTCAAGAAATCATGGACGCTAAGGCCCTCGCGGCTTCAAAGAGCCACAGCGAAGCCGAAAGAAGACGCCGAGAGAGAATCAACAACCACCTCGCCAAGCTTCGAAGCTTATTGCCAAACACAACCAAAACAGACAAAGCTTCACTATTAGCAGAAGTAATCCAGCATGTGAAGGAGCTAAAGCGTCAAACTTCAATAATAGCAGAAACAAGCCCTGTGCCCACGGAAACCGACGAGCTGACGGTGGACGACGCTTCAGATGAGGACGGCCGGTTCGTGATCAAAGCCTCGCTTTGCTGCGAAGACAGGTCCGATCTCTTGCCGGACCTCATCAAGACGTTGAAGGCCCTAAGGTTGAGAACCGTCAAGGCGGAGATCACCACGCTCGGCGGACGCGTTAAGAACGTCTTGTTCGTCACCGGCGAAGAAGATGAGTCCGCTGGCGGCGGCGGCGGTGATAACCAGCATTGTATAAGCTCCATACAAGAGGCTTTGAAGGCAGTGATGGAGAAGAATGGTGGTGGTGGTGATGAAAATGGAAATGTTAAGAGGCTAAGAACTAATAATAATATCAATATCCTTGAACAAAACAGGTCTTTATGA 1152 0.5165 MAIISPSSPPQRLRMKIEEDQGQCSSSSQAINNIQSYQEQLMLHQMMQQQQNADVFGGNSSNNNNNNNNERGLGFPEVSPLFHPPPPPQPPWSLPPVHSFNPVRDTDHHHHQFLVPPPSSSLYAGLFNRRVNPSLQFAYDGPSNSDQHHLRIISDTLGVGPVVGQPGSVAPFGLQAELVGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSIIAETSPVPTETDELTVDDASDEDGRFVIKASLCCEDRSDLLPDLIKTLKALRLRTVKAEITTLGGRVKNVLFVTGEEDESAGGGGGDNQHCISSIQEALKAVMEKNGGGGDENGNVKRLRTNNNINILEQNRSL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0477 383 Gene3D - 189 250 IPR036638 GO:0046983
Alju09g0477 383 Pfam Helix-loop-helix DNA-binding domain 197 243 IPR011598 GO:0046983
Alju09g0477 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 250 IPR036638 GO:0046983
Alju09g0477 383 CDD bHLH_AtAIG1_like 189 266 - -
Alju09g0477 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Alju09g0477 383 PANTHER TRANSCRIPTION FACTOR BHLH30 53 376 IPR045847 GO:0003700|GO:0006355
Alju09g0477 383 FunFam transcription factor bHLH30 189 252 - -
Alju09g0477 383 SMART finulus 200 249 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0477 Alju-ChrAlju09 6913920 6917265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0477 27 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.182 9.98e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g0477 HLH 2.7e-12 No_clan