LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g0472	ATGGCCACTGTGGCTACAGCTCGAGGAATTGGCGTAGGAGCGACGAAGCTTCACCAAAGACCCAATCATATTCACTCTAACCATAGCAATAAGTCGCTCTTTTTAGGTCACAAACTTCGAAATAAACCCTCTGTTACAGAATCTCCATGCACTGGAAGAATCACAACATTCTCGAACCCTAAATCGTTCGTGGCCTGTGCTTTGGGAGGCGAATGGCTCGATTCGATTCACCACCTATTTGTGGCTGTCGGCGTTGGGCTTCCTTGCACGGTTATGGAGTGTGGCGATATAATCTACAGAAGCACTCTTCCGAAGTCGAGTGGCCTGACGATTACAGCTCCTGGAGTGGTTCTGGCTCTCGGTGCTGTGTCCTACCTCTGGGCTACGCCTGGTGTGGCCCCTGGTTTCTTTGATATGTTCGTTCTTGCCTTTGTTGAAAGATTGTTCAGACCTACTTATAGAAAGGATGACTTTGTCCTGGGGAAGAAGTTAGGTGAGGGATCCTTTGGTGTAGTTTACAGGGTTTCATTGGCGAAGAAGCCCTCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTTCGGAGAGCTTGTGCAAACAGCTGTGCTGATTACGTTTACGGTTTTCTTGAGAGTTCTGGGAAGAAGAGTGGTGGATACTGGCTTATATGGAAATTTGAAGGGGATGCCACCCTAGCAGATCTAATGCAGAGTAAAGAGTTCCCATATAATGTTGAAACAATGATTCTGGGCAAGGTCCAGGACTTGCCTAAGGGATTGGAAAGAGAAAATAGAATAATTCAAACAATTATGAGGCAGATCTTGTTTGCATTGGACGGTCTTCACTCAACTGGAATCGTGCATAGGGATATTAAGCCCCAGAATATTATTTTCTCTGAAGAATCTCGTACATTCAAGATTATTGATCTGGGAGCTGCAGCAGATTTGCGGGTTGGCATCAACTATATTCCTAATGAGTTTCTTTTGGATCCAAGATATACTGCCCCAGAGCAGTACATCATGAGCACACAAACTCCCTCTGCACCCTCTGCACCAGTTGCAACTGCACTTTCCCCAGTCCTATGGCAGTTGAATCTACCAGATAGATTTGATATCTATAGTGCTGGCCTAATATTTCTTCAAATGGCAACCCCTGGATTACGCTCCGATAATTGCCTCGTACAATTTAACCGTCAGTTGAAGAGGTGTGACTATGACTTGGTTGCCTGGAAAAAAAGTGTAGAAACTCGGTGTGGTCTTGAACTAAGGAGAGGCTTTGAGCTTCTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTCCGCTACAAAGCAAGGCAACGACTCAGTGCAAAAGCGGCATTAGCCCATCCCTACTTTGACGGGGAAGCCTTGTTGGCACTATCTTTCACGCAAAATCTAAGACTGCAGCTCTTACGGGCAACCCAGCAGGATTATGGAGAAGCAGCCAAATGGATTATTCAGCTCATGGCAAAATCTGGAACCTCAGAAGTTGGAGGATTTACTGAAGCTCAGCTCCTGGAACTAAGAAAAATTGAACCAAAGAAGAAGAATAGTGCGCAAAGAAATGCTCTAGCCTCAGCTCTCAAACTTCAGAGGAAAATCATAAAAACATTGAATGAGAGTATGGATGAGCTTAGCCAACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCCAGGGAAGAATGA	1761	0.4532	MATVATARGIGVGATKLHQRPNHIHSNHSNKSLFLGHKLRNKPSVTESPCTGRITTFSNPKSFVACALGGEWLDSIHHLFVAVGVGLPCTVMECGDIIYRSTLPKSSGLTITAPGVVLALGAVSYLWATPGVAPGFFDMFVLAFVERLFRPTYRKDDFVLGKKLGEGSFGVVYRVSLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADYVYGFLESSGKKSGGYWLIWKFEGDATLADLMQSKEFPYNVETMILGKVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAAADLRVGINYIPNEFLLDPRYTAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMATPGLRSDNCLVQFNRQLKRCDYDLVAWKKSVETRCGLELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDGEALLALSFTQNLRLQLLRATQQDYGEAAKWIIQLMAKSGTSEVGGFTEAQLLELRKIEPKKKNSAQRNALASALKLQRKIIKTLNESMDELSQRRKSLWWSRWIPREE	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g0472	586	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	299	311	IPR008271	GO:0004672\|GO:0006468
	Alju09g0472	586	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	71	561	-	-
	Alju09g0472	586	Gene3D	Transferase(Phosphotransferase) domain 1	266	481	-	-
	Alju09g0472	586	Coils	Coil	552	572	-	-
	Alju09g0472	586	CDD	STKc_SNT7_plant	162	476	-	-
	Alju09g0472	586	Gene3D	Phosphorylase Kinase; domain 1	144	239	-	-
	Alju09g0472	586	ProSitePatterns	Protein kinases ATP-binding region signature.	164	191	IPR017441	GO:0005524
	Alju09g0472	586	SMART	serkin_6	158	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g0472	586	Pfam	Protein kinase domain	160	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g0472	586	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	267	481	-	-
	Alju09g0472	586	ProSiteProfiles	Protein kinase domain profile.	158	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g0472	586	SUPERFAMILY	Protein kinase-like (PK-like)	143	479	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g0472	Alju-ChrAlju09	6830212	6834253	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g0472	276	477	Core Cell Cycle Gene Families	AT2G38620	29.577	7.12e-16	75.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Alju09g0472		Pkinase	3.3e-19	CL0016