Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0469 ATGGACGCAGGAAGCTCCATGGACGAAAGCGTTACAACTGATTCAGTTTCTGTTTCCCTTTCTCCGCTGAAGATCCCGTCGAACAAGTCATCTCCGCCACCGCCCAACAGTCTGTGCCGCGTCGGCAGCGGTGCTAGCACCATCGTGGACTCGGACATCGTCGGAGTCGAAGCCGAGTCCCGGAAACTGCCGTCGTCGAAATACAAAGGTGTCGTACCGCAGCCTAATGGCCGTTGGGGTGCTCAGATTTACGAGAAGCACCAGCGAGTGTGGCTGGGCACTTTCAATGAAGAAGACGAGGCAGCGAGAGCTTACGACATCGCCGCGCAGCGATTCCGTGGCCGAGACGCAGTCACCAATTTTAAGCCTGTCGCCGTTGCCGGAGTAAGCTCCGGCGCCGATGATGACCACGAAGACTATGAAGCGGCGTTCCTCAACGCGCATTCGAAAGTCGAGATCGTCGACATGCTAAGGAAACACACTTACAATGACGAGCTGGAACAGTTCAAGCGAAACTACGGATTAACGGTGGACGCAAACGGGAAACGGGTCATCAAGGAAGGATCCAAGGGTTCGGGTCGGGTCAACGATGCGGCGCGGGATCAGCTATTTGAGAAAGCAGTGACACCGAGCGACGTTGGAAAATTGAATCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTCCCCTTGCCGTTGCAGGTGGGAGTCTCCGCGCCGTACACGGCGGTGACGGCGGCCGCTGCGAAGGGCGTATTGCTGAATTTCGAAGACAGCGGCGGGAAGGTTTGGAGGTTCAGGTACTCGTACTGGAATAGTAGCCAGAGCTACGTTCTGACGAAAGGATGGAGCCGGTTCGTGAAGGAGAAGAACCTCAAAGCCGGAGATACGGTTTTTTTCTCCCGGTCCACTGGACCGGACAAGCAACTGTACATCGACTGGAAGAACGCCAGAATTAGTACTACCACCACCTGTGCTACAATAAATTCAGGTGGCGCAGAATTGTTTGAACCGGTTGGCCCAGTGGTGGAGCCGGTTCAGATGGTGAGACTCTTCGGGGTCAACATTTTGAAGATGCCCAGTTCAGATGCCCTTTCTGCTGCTAGTGGGTGTTGCAATGGGAAGAGGAGAGAGATGGATCTGTTCTCGTTGGAATGTAACAAAAAGCCAAAGATCATTGGAGCTTTGTAA 1194 0.5444 MDAGSSMDESVTTDSVSVSLSPLKIPSNKSSPPPPNSLCRVGSGASTIVDSDIVGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPVAVAGVSSGADDDHEDYEAAFLNAHSKVEIVDMLRKHTYNDELEQFKRNYGLTVDANGKRVIKEGSKGSGRVNDAARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPLQVGVSAPYTAVTAAAAKGVLLNFEDSGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVFFSRSTGPDKQLYIDWKNARISTTTTCATINSGGAELFEPVGPVVEPVQMVRLFGVNILKMPSSDALSAASGCCNGKRREMDLFSLECNKKPKIIGAL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0469 397 SMART B3_2 204 319 IPR003340 GO:0003677
Alju09g0469 397 MobiDBLite consensus disorder prediction 1 42 - -
Alju09g0469 397 SUPERFAMILY DNA-binding pseudobarrel domain 203 315 IPR015300 -
Alju09g0469 397 Gene3D - 193 329 IPR015300 -
Alju09g0469 397 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Alju09g0469 397 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Alju09g0469 397 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Alju09g0469 397 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Alju09g0469 397 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Alju09g0469 397 ProSiteProfiles B3 DNA-binding domain profile. 204 319 IPR003340 GO:0003677
Alju09g0469 397 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Alju09g0469 397 Pfam B3 DNA binding domain 204 316 IPR003340 GO:0003677
Alju09g0469 397 CDD B3_DNA 203 304 IPR003340 GO:0003677
Alju09g0469 397 MobiDBLite consensus disorder prediction 6 26 - -
Alju09g0469 397 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Alju09g0469 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 367 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0469 Alju-ChrAlju09 6760761 6761954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0469 8 397 B3 DNA Binding Superfamily AT1G25560 58.145 1.39e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Alju09g0469 B3 6.3e-28 CL0405