Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0466 ATGCAGCGTCAGAAAATGGGGTTTCGAGAATACGTTGAAGCGTTAGAAGAAGAACGCCAGAAAATTCAGGTGTTCTCTAGAGAACTTCCGCTTTCACTTGAGCTTGTCTCGCAAGCCATTGATGCTTATAGGCAACAACTTTCTGGAACGACGGAGTACAATGTTCATGGACAATCGGATTGTTCGGAGCAGACGTCAATGGAAGAAGGACCTGTTCTTGAAGAGTTTATTCCGATCAAGAAAAGAGATTCCCCTGATTGTGACGACGAAGAAGACGAAGATGAACAGCATTCGCATATGCATAAGATTCTCAAGGACAACAATAATAAGAACTCTGATAAGAGAAAATCCGACTGGCTCAGATCCGTCCAGCTCTGGAATCCAGATCCCCCAACTAAAGAGGATTTGCCGAGAAAAGCGACGGTAGTGGAAGTGAAGAGAAATGGAGGGGCGTTCCAGCCATTTCACAGAGAAGACAATAATAATGTTGAAAAGACGAACAATAACAACAACATCAACGACAACAACACATCGGCAGCTAAATCTGCATCTCCGGCTGCCGTGCCTGCAATGAGCTCCACCGGCGGCGGCGGAGGCGGAAGCAAGAGATCGGAGGAAAAAGAAGGGCAGGGTCAGAGGAAGCAACGGCGGTGTTGGTCACCGGAATTACACAAACGCTTCTTACAAGCCCTTCAACAACTCGGCGGTCCAGATTGTGCAACTCCAAAGCAGATCAGAGAGCTCATGAAGGTGGATGGCCTCACAAACGATGAAGTCAAAAGCCACTTGCAGAAATTTCGTTTGCACACAAGAAGACCAAGTCCTATGATTCACAACAATGCTACATCACAAACAGCCCCGTTTGTTCTTGTTGGGAACATATTTATGCAGCCACCAGAATATGCAGCGGCAGTGGCAACTTCAACAGCATCAGGCGAAGTGACCACAGTGACTACGCCGACCGGAATTTATGCGCCAGTGGCGGCGCATCCTCTGATGCCGGTGGCGGTGCCGGTGCCGCCCGTTGAGAAGAAGGCTCAGGTGAAGCAATTGGAGCAGTCACATTCAGATGAAGAAAGGGTGAATCATGGTAGTGAAGGAGCTGTTCATTCAAATTCTTCTCCTGATTCATCATCTTCCACACACACTACTTCTCATTCTCATGGATATTGA 1173 0.4774 MQRQKMGFREYVEALEEERQKIQVFSRELPLSLELVSQAIDAYRQQLSGTTEYNVHGQSDCSEQTSMEEGPVLEEFIPIKKRDSPDCDDEEDEDEQHSHMHKILKDNNNKNSDKRKSDWLRSVQLWNPDPPTKEDLPRKATVVEVKRNGGAFQPFHREDNNNVEKTNNNNNINDNNTSAAKSASPAAVPAMSSTGGGGGGSKRSEEKEGQGQRKQRRCWSPELHKRFLQALQQLGGPDCATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPSPMIHNNATSQTAPFVLVGNIFMQPPEYAAAVATSTASGEVTTVTTPTGIYAPVAAHPLMPVAVPVPPVEKKAQVKQLEQSHSDEERVNHGSEGAVHSNSSPDSSSSTHTTSHSHGY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0466 390 MobiDBLite consensus disorder prediction 149 219 - -
Alju09g0466 390 MobiDBLite consensus disorder prediction 348 365 - -
Alju09g0466 390 MobiDBLite consensus disorder prediction 164 189 - -
Alju09g0466 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 269 IPR006447 GO:0003677
Alju09g0466 390 Pfam Myb-like DNA-binding domain 216 265 IPR001005 -
Alju09g0466 390 MobiDBLite consensus disorder prediction 201 219 - -
Alju09g0466 390 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Alju09g0466 390 MobiDBLite consensus disorder prediction 94 115 - -
Alju09g0466 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 367 IPR044787 GO:0003700|GO:0006355
Alju09g0466 390 MobiDBLite consensus disorder prediction 344 390 - -
Alju09g0466 390 FunFam Myb family transcription factor 213 271 - -
Alju09g0466 390 Coils Coil 8 28 - -
Alju09g0466 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 271 IPR017930 -
Alju09g0466 390 MobiDBLite consensus disorder prediction 366 390 - -
Alju09g0466 390 MobiDBLite consensus disorder prediction 78 115 - -
Alju09g0466 390 Gene3D - 213 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0466 Alju-ChrAlju09 6706999 6708641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0466 10 329 G2-like Transcription Factor Family AT1G68670 48.665 1.19e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju09g0466 Myb_DNA-binding 2.1e-06 CL0123