Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0442 ATGAAGATTTTCGTCAAGACTCTGAAAGGCACTCACTTCGAAATTGAAGTGAAGCCAGAAGACACGGTTACTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGCGCAGATGTCTATCCCGCAGCACAACAGATGCTTATCCATCAAGGGAAGGTCCTCAAAGATAGCACCACCTTGGAGGAAAATAATGTGGTTGAAAATAGTTTTGTTGTAATTATGCTTTCTAAGAGCAAAAGCTCATCTGGTGAGGGTTCTACTATTACAGCTGCACCTTCAACCAAGACCCCAGCTGCAAGTGCTACTCCCACCTCGTCTTCTGTTGCCAGTTCAACCACTCCTCAAGCTCCTGCTGCTGCGTCAGAGTCTGATGTCTATGGGCTGGCAGCATCTAACCTTGTAGCTGGAAGCAACTTGGAGGAAACCATTCAGCAAATTCTTGATATGGGTGGGGGGAGCTGGGATAGGGACACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAAAGAGCCGTTGAATATTTGTATACAGGTATTCCAGAGCAAGCTGAAGCTCCTCCTGTGGCACGAGTGCCTGCAAGTCCCCAAACTGCAAATCCTCCTGCACCAGCTCCACAAGCTGCACAGCCAGCGCCTGCTCCTACAAGCGGACCAAACGCGAATCCTTTAGACCTTTTTCCACAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCACCCTTGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAGCAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGGCTGACTTCCTTCGCCTGATAAATGAACCAGCAGAAGGTGGTGAGGGGAACATATTAGGGCAGCTGGCTGGTGCCATGCCCCAACAAATAGCTGTTACCCCTGAGGAGCGAGAAGCAATTGAACGACTTGAAGCGATGGGATTTGATCGTGCACTCGTATTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGACTGA 1110 0.4811 MKIFVKTLKGTHFEIEVKPEDTVTEVKKNIETVQGADVYPAAQQMLIHQGKVLKDSTTLEENNVVENSFVVIMLSKSKSSSGEGSTITAAPSTKTPAASATPTSSSVASSTTPQAPAAASESDVYGLAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPASPQTANPPAPAPQAAQPAPAPTSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPAEGGEGNILGQLAGAMPQQIAVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFED 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0442 369 MobiDBLite consensus disorder prediction 189 229 - -
Alju09g0442 369 FunFam UV excision repair protein RAD23 1 80 - -
Alju09g0442 369 Pfam XPC-binding domain 244 300 IPR015360 GO:0003684|GO:0006289|GO:0043161
Alju09g0442 369 Gene3D - 316 364 - -
Alju09g0442 369 FunFam UV excision repair protein RAD23 homolog 316 364 - -
Alju09g0442 369 SMART uba_6 325 362 IPR015940 -
Alju09g0442 369 SMART uba_6 138 178 IPR015940 -
Alju09g0442 369 SUPERFAMILY UBA-like 135 187 IPR009060 GO:0005515
Alju09g0442 369 MobiDBLite consensus disorder prediction 79 115 - -
Alju09g0442 369 PRINTS DNA repair protein Rad23 signature 336 350 IPR004806 GO:0006289
Alju09g0442 369 PRINTS DNA repair protein Rad23 signature 270 292 IPR004806 GO:0006289
Alju09g0442 369 PRINTS DNA repair protein Rad23 signature 351 366 IPR004806 GO:0006289
Alju09g0442 369 PRINTS DNA repair protein Rad23 signature 319 335 IPR004806 GO:0006289
Alju09g0442 369 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Alju09g0442 369 CDD Ubl_Rad23 1 74 - -
Alju09g0442 369 SUPERFAMILY UBA-like 306 367 IPR009060 GO:0005515
Alju09g0442 369 FunFam UV excision repair protein RAD23 homolog 131 181 - -
Alju09g0442 369 FunFam UV excision repair protein RAD23 B 235 300 - -
Alju09g0442 369 CDD UBA1_Rad23_plant 132 181 - -
Alju09g0442 369 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Alju09g0442 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 136 179 IPR015940 -
Alju09g0442 369 NCBIfam UV excision repair protein Rad23 1 368 IPR004806 GO:0006289
Alju09g0442 369 Gene3D - 131 181 - -
Alju09g0442 369 SMART CBM 242 285 IPR006636 -
Alju09g0442 369 SUPERFAMILY XPC-binding domain 240 306 IPR036353 GO:0003684|GO:0006289|GO:0043161
Alju09g0442 369 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 358 - -
Alju09g0442 369 MobiDBLite consensus disorder prediction 194 218 - -
Alju09g0442 369 Gene3D - 235 300 IPR036353 GO:0003684|GO:0006289|GO:0043161
Alju09g0442 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 322 363 IPR015940 -
Alju09g0442 369 Pfam UBA/TS-N domain 138 176 IPR015940 -
Alju09g0442 369 Pfam UBA/TS-N domain 325 360 IPR015940 -
Alju09g0442 369 Gene3D - 1 80 - -
Alju09g0442 369 SMART ubq_7 1 75 IPR000626 GO:0005515
Alju09g0442 369 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0442 Alju-ChrAlju09 6403341 6408026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0442 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 3.55e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g0442 09 6403341 6408026 Alju09g0442 09 6403341 6408026 ECH