Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0437 ATGCCGGAGCCTCGAAATCAGCCGTCAACTCAGACTATGAACATGAACAATCCCTGCAAAAGGATGAAGCAACACAAGCAAAACCCTATTCCAACGAGAAAGCTTCGCATAATCTGTGACGACCCATACGCCACAGAGTCGTCTTCAAGCGAAGACGAAGGAGGAAACCAACGATCCGACACTCGTTGGCCGAGGAAGATGAAGCGAATCGTTCGTGAACTCACTCTACCTCTTGCTCCTGCCATTTCTAAATCCACTGAAACTGAAAGCTCATTTCAGGAAAGCAACAGTGGAGTCACCACCAAGTTTGCAGATAATCAAACCCAGAACAAGAAGAGGGTTTTGACCAAGACCCTATCATCAACCAAAAGCTCGTCTTCTTCATCCAGATTCAGAGGCGTCCGACAGAGAAAATGGGGGAAATGGGCTGCTGAAATTCGTGATCCCTTTAAAGGTGTTCGTATCTGGCTTGGTACTTACAATACTGCTCAGGAAGCTTCTCAAGCCTATGAAGCCAAGAAGATGGAGTTCGAAGCCATTGCTAAGGCTCAACAACATGCTCAAGCTCAATCTGATAAGAGTCACATTTTTTCGTCTTCCTCTGCCCATCAAGTTGCTGCTTCTGCATCAGAAGATTCAGAGAGTGTCTTCTCCCAAACCTCACCTTCCTCTGTGCCTGAACTCGATACCTCAACTTCCAAATCCACTGAAGATGCTGCCAACTCCATCAACAGCAGTTCAAGCAAAGAACATGACGAAGAACAAAAAGAGAATCAACGAGAAGAAGAACAAGAAGCAGCAGCAGCAGCAGCAGCAGTAGCTTCTGCTATAACTTTGGAGGTTGATAGTTTTGAGAACGAATTTGCAGAACTTCAAATCCCAGATTTGAGCTTCCTGAGCGAGCCACCATTAGTACAAGCACCACAACCAACAACAACATCATTATCTGCAGCAGCAGCAGCAGATGTTTCAGACATAAACCTAGGATTTGATCTGGAATGGGCTATGTTTGACAATTTTAGTAATGGTTTGGAGGATCCTTTTGGTTTGGATGACATGCAGATTTGTGGGTTTGATGAGGGTGACATGAATGCGAGTGAGCTGCCTGATTTTGATTTTGATCTATGTGCTGATGAGTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGCGTATAA 1182 0.4518 MPEPRNQPSTQTMNMNNPCKRMKQHKQNPIPTRKLRIICDDPYATESSSSEDEGGNQRSDTRWPRKMKRIVRELTLPLAPAISKSTETESSFQESNSGVTTKFADNQTQNKKRVLTKTLSSTKSSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEAKKMEFEAIAKAQQHAQAQSDKSHIFSSSSAHQVAASASEDSESVFSQTSPSSVPELDTSTSKSTEDAANSINSSSSKEHDEEQKENQREEEQEAAAAAAAVASAITLEVDSFENEFAELQIPDLSFLSEPPLVQAPQPTTTSLSAAAAADVSDINLGFDLEWAMFDNFSNGLEDPFGLDDMQICGFDEGDMNASELPDFDFDLCADEFAGWTEEPLNIPCV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0437 393 MobiDBLite consensus disorder prediction 82 109 - -
Alju09g0437 393 MobiDBLite consensus disorder prediction 247 264 - -
Alju09g0437 393 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Alju09g0437 393 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Alju09g0437 393 MobiDBLite consensus disorder prediction 1 66 - -
Alju09g0437 393 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 267 - -
Alju09g0437 393 MobiDBLite consensus disorder prediction 190 246 - -
Alju09g0437 393 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Alju09g0437 393 Gene3D AP2/ERF domain 129 184 IPR036955 GO:0003700|GO:0006355
Alju09g0437 393 SUPERFAMILY DNA-binding domain 129 177 IPR016177 GO:0003677
Alju09g0437 393 CDD AP2 130 172 IPR001471 GO:0003700|GO:0006355
Alju09g0437 393 MobiDBLite consensus disorder prediction 190 269 - -
Alju09g0437 393 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
Alju09g0437 393 SMART rav1_2 130 184 IPR001471 GO:0003700|GO:0006355
Alju09g0437 393 Coils Coil 244 271 - -
Alju09g0437 393 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0437 Alju-ChrAlju09 6340172 6341353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0437 31 392 AP2-EREBP Transcription Factor Family AT1G68550 34.688 1.55e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju09g0437 AP2 3.7e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g0437 09 6340172 6341353 Alju09g0437 09 6340172 6341353 ECH