Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0419 ATGAGCAAAAAGCAGAAAAATTCGTCGTCCAACATTCAAGAATTCATGGCTTTCTTCAATAATGATTCCTTCTCAGATCAAAACCTTAATCTCCCTCTCCTCCACACCGATAATATTAATCCACAGCCTCTTCACTCTTCAATCTCTCCTACTTATCATGTTCTTCAACATTCACAAACCTTTCTGGATTCTTCTGTACCTTCTTCTGCTGCTGACAACAACAAGAGCCTGCAGGTTATGAGCAAAAGGAAGAGAAACAGTAAAAGACTTGAAGTTGAAGAAGAGAAAACAAAAGACGTCATCCATGTAAGAGCCAAAAGAGGTCAAGCAACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGAGAAAATCAACGAGAAGCTACGATGTTTGCAAGAACTAGTTCCAGGGTGCTACAAGGCGATGGGTATGGCAGTAATGTTAGATGTGATCATAGATTATATTCAATCTCTGCAACAACAGATTGAGTTTCTTTCGATGAAGCTTACAGCAGCAACCATGCATTATGATTTTCACACTTCTGAGTTCATCAATAATGTCCCCGAAACCTTCCAGACCGTAATCTGTACTGTAATTTTCACATCAAAGCTTGGTGGTCAAAAAGTTGGCTACATAATTGGGAAACAAATATAA 657 0.3912 MSKKQKNSSSNIQEFMAFFNNDSFSDQNLNLPLLHTDNINPQPLHSSISPTYHVLQHSQTFLDSSVPSSAADNNKSLQVMSKRKRNSKRLEVEEEKTKDVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQELVPGCYKAMGMAVMLDVIIDYIQSLQQQIEFLSMKLTAATMHYDFHTSEFINNVPETFQTVICTVIFTSKLGGQKVGYIIGKQI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0419 218 Gene3D - 105 178 IPR036638 GO:0046983
Alju09g0419 218 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 185 IPR024097 GO:0006355
Alju09g0419 218 SMART finulus 115 165 IPR011598 GO:0046983
Alju09g0419 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 178 IPR036638 GO:0046983
Alju09g0419 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 159 IPR011598 GO:0046983
Alju09g0419 218 MobiDBLite consensus disorder prediction 64 95 - -
Alju09g0419 218 Pfam Helix-loop-helix DNA-binding domain 113 160 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0419 Alju-ChrAlju09 6015495 6016926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0419 93 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 80.899 1.68e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g0419 HLH 5.3e-06 No_clan