Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0408 ATGCCAAACGGAGCTCTGGCGATAGTAAATGGCAATATGAACACAGTTGATTCCTCATCCTCACCTTCCAAGACTTGCTTAAAAAACTCGCCGATTCTGATATTCTCTTTCTTCCATAAAGCTATTCGCTCTGAGCTCGATAGCCTCCATCGAGCCGCCTTGGATTTTGCCACTAACCAACAAGCTGCTGCCTCTGACATCAAACCCTTGTTCGACCGTTGTCACTTTCTTCATACTATCTATAAGCATCATTGCAATGCGGAGGATGAGGTCATATTTCCTGCATTAGATATACGTGTGAAGAATGTTGCGCGAACGTATTCCTTGGAGCATGAGGGAGAGGGTCTTCTTTTTGATCAATTGTTCAAGCTGCTAAATTCTAATTTGCTAGAGGAAGAGGGCTACCGTAGGGAATTAGCTTCTTGTACTGGTGCCCTTAGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAGCAGGTCTTCCCCTTGGTTATTGAGAACTTTTCATTTAAAGAGCAAGCATCACTGGTGTGGCAATTTCTTTGCAGCTTACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTTGTATGTATCAACCGATGAACATCAGGATATGCTTAAGTGCTTGTGCTCAATAATTCCTGAAGAGAAGCTTCTTCAACAGGTTGTTTTTGGATGGATGGAAGGGGTGAAGATTAAATGTAGAAGCTGCATAAATGATACCAAGGCTCATTGTGAGAATGTTGGGACACATGACTTAACCGATTGTTCTGAAAAGGTGTATTGTGCTTGTGAACCTTCCAAAACTGGAAAAAGGAAATGGATGGAGCTAAGCATTGATCATACCAGTTCTTTTTCATCATGCCCTATTGATGAATTATTACTGTGGCATAAGGCCATAAAACAAGAGTTGATTGATTTAACTGAAGCTGTTAGGAAGATACAACTTTCTGGAAAATTTTCTGATTTGTCTGCGTTTAATGGGAGGTTGCAGTTTATTGCTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAGATGCAGATATTTCTTTTCTTGATGAGCATGCTGATGGGGAACTTCAGTTTGACAAGCTTAGATCCCTGATGGAAGGAATTCAGAATGCTGAAGTCAACTCATCATCTACTGAGGATTACGTGAAGTTGAGGTCTCACACTGAACAAATAAAGGACACCATACTGACGCACTTTGACAATGAGGAAGCTCAGGTTCTACCGCTTGCAAGAAAACATTTTAGCCCCCAAAGACAACGAGAACTACTTTATGAAAGTTTGCGCTTAATGCCTTTGAAATTGATTGAATCTGTAATACCATGGCTGGTCGGATTTCTAAGTGAAGAAGAAGCGAAGTTATTTCTGCTGAATATGTATATGGCAGCCCCAACAACAGATTATGCATTAGTTACACTGTTTTCTGGTTGGGCATGCAAAAGAAAATCAAGGAACAATGATTCCTTTTCAAGTAAAACAGGTTTGTGTTCTGCAAGGAAATTATCGGAGATAGAAAACACTAGTCCATCATTCTGCATATGTGCACCTTCATTTAGTCCCGAGAAAAAATACTCATCCATTCTACAAGATGGTGCACATGGAAGTAGTGGACCAGTCAAATATGGAAAGCTAGAGCCAAGGAATTGGAATGATGTTTCTTCCCTCACGGGAACTGGAGAATCTTTTACCTTACCTGATAATCAGACTTGCTGTGTCCCTGGATTGGGGGTAAATGCAAGTCATCTGGGAGCGAATTCATTAGTCCCTACAAAATCTCTGCGATCGTTATCTAATGGTTCTGCTCCTTCCTTTAACTCTAGTTTGTTTGTCTGGGAAACAGATGTAGTCTCTGCTGACAATGGGTTCAAAACACGACCTATTGATAACATATTTAAATTTCACAAAGCCATTTGTAAAGACTTGGAGTATATAGATGCTGAATCTGGAAAATTGTTTGATTGTGATGAAAATTTCCTGAGGAAGTTCACTGGTAGATTTCGCTTATTGTGGGGTTTGTACAGAGCTCATAGCAATGCAGAGGATGATGTAGTATTTCCAGCATTAGAATCAAAAGAAACTCTTCATAATGTGAGCCACTCCTACACTTTGGACCACAAGCAGGAAGAGAAATTATTTGTAGATATTTCATCTGGACTCTCTGAGCTTACTCAGTTACATGAATCCTTGAATAATAAGAATTCATCTGACGATTTTACCAGCTTCTACTCTGATTATTCTGGTTGCTCTGATACCATACAAAAGTACAATGAGCTAGTTACAAAGATCCAGGGCATGTGCAAATCTATCAGAGTAACACTAGATCAACATATCTTCCGTGAAGAACTTGAGTTATGGCCACTATTTGATGTTCATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCGTATAATTGGTACTACTGGGGCAGAGGTTCTTCAATCGATGCTGCCATGGGTAACTTCTGCTCTCACACAAGAGGAGCAAAACAAAATGATGGACACATGGAAGCAGGCTACCAAAAACACCATGTTCAATGAGTGGCTTAGTGAGTGGTGGGAAGGGCCCTCCTCAATTTCAAACACAAGTACACCTAGTGACCATGTTTCACTAGGTGTTGGTGCCTTTGGCAATTTGGATCATAGCTCTCAAGCTTTCAGGCCTGGGTGGAAAGATATATTCAGGATGAACCAGAATGAACTAGAATCTGAAATTAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGGAAATCCTATCTTATTCAAAATCTATTGACAAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTAAAGAAACAGATGAATTTGGAAATGGAGATGTACTTGAAAGATCACCTTCGTTTCATGATCCAGAGAAAAAAATCTTTGGATGTGAGCATTACAGAAGAAATTGTAAACTTCTCGCTGCTTGCTGTGGAAAGCTATTCTCCTGCAGGTTTTGCCATGACAAAGTCAGTGACCATTCCATGGATAGGAAGGCTACAACTGACATGATGTGCATGCGCTGCCTGCAATTACAGCCAATTGGACCAGTTTGTGCAACACCTTCTTGTGGTGGTCTGTCAATGGCAAAGTACTACTGCAGTATTTGCAAGTTTTTTGATGATGAAAGGACAGTTTACCATTGCCCTTTCTGCAATATATGCCGTCTGGGGAAAGGACTTGGTGTTGATTCCTTCCATTGCATGCAGTGTAATTGTTGCTTGTCAATGCAATTAGTTGACCACCAGTGCCAGGAAAAAAGCTTAGAAACGAACTGCCCCATCTGTTGTGATTTTTTGTTCACATCTAGTGCATCTGTCAGAGCCCTTCCTTGTGGCCATTTCATGCATTCCACTTGCTTTCAGGCATATACTTGTAGTCACTACACCTGTCCGATTTGTCGTAAATCGTTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCTCTGTTGGCTTCTGAGGAACTCCCTGAAGATTATCAGAATCGCCGTCAGGATATACTATGTAATGATTGTGATAAGAAGGGGACTGCACCATTCCATTGGCTATACCATAAGTGTGGGTTATGCGGATCTTATAATACAAGGGTGATTTAA 3651 0.407 MPNGALAIVNGNMNTVDSSSSPSKTCLKNSPILIFSFFHKAIRSELDSLHRAALDFATNQQAAASDIKPLFDRCHFLHTIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGEGLLFDQLFKLLNSNLLEEEGYRRELASCTGALRTSISQHMFKEEEQVFPLVIENFSFKEQASLVWQFLCSLPVKMMAEFLPWLALYVSTDEHQDMLKCLCSIIPEEKLLQQVVFGWMEGVKIKCRSCINDTKAHCENVGTHDLTDCSEKVYCACEPSKTGKRKWMELSIDHTSSFSSCPIDELLLWHKAIKQELIDLTEAVRKIQLSGKFSDLSAFNGRLQFIAEVCIFHSIAEDKVIFPAIDADISFLDEHADGELQFDKLRSLMEGIQNAEVNSSSTEDYVKLRSHTEQIKDTILTHFDNEEAQVLPLARKHFSPQRQRELLYESLRLMPLKLIESVIPWLVGFLSEEEAKLFLLNMYMAAPTTDYALVTLFSGWACKRKSRNNDSFSSKTGLCSARKLSEIENTSPSFCICAPSFSPEKKYSSILQDGAHGSSGPVKYGKLEPRNWNDVSSLTGTGESFTLPDNQTCCVPGLGVNASHLGANSLVPTKSLRSLSNGSAPSFNSSLFVWETDVVSADNGFKTRPIDNIFKFHKAICKDLEYIDAESGKLFDCDENFLRKFTGRFRLLWGLYRAHSNAEDDVVFPALESKETLHNVSHSYTLDHKQEEKLFVDISSGLSELTQLHESLNNKNSSDDFTSFYSDYSGCSDTIQKYNELVTKIQGMCKSIRVTLDQHIFREELELWPLFDVHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFNEWLSEWWEGPSSISNTSTPSDHVSLGVGAFGNLDHSSQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKSYLIQNLLTSRWIASQQKSSKETDEFGNGDVLERSPSFHDPEKKIFGCEHYRRNCKLLAACCGKLFSCRFCHDKVSDHSMDRKATTDMMCMRCLQLQPIGPVCATPSCGGLSMAKYYCSICKFFDDERTVYHCPFCNICRLGKGLGVDSFHCMQCNCCLSMQLVDHQCQEKSLETNCPICCDFLFTSSASVRALPCGHFMHSTCFQAYTCSHYTCPICRKSLGDMAVYFGMLDALLASEELPEDYQNRRQDILCNDCDKKGTAPFHWLYHKCGLCGSYNTRVI 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0408 1216 Gene3D - 1180 1216 - -
Alju09g0408 1216 Gene3D nmb1532 protein domain like 636 864 - -
Alju09g0408 1216 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 683 1216 - -
Alju09g0408 1216 SUPERFAMILY Zinc hairpin stack 1047 1102 IPR037275 -
Alju09g0408 1216 CDD Hr-like 295 423 - -
Alju09g0408 1216 ProSiteProfiles Zinc finger RING-type profile. 1110 1152 IPR001841 -
Alju09g0408 1216 FunFam Zinc finger protein BRUTUS 635 865 - -
Alju09g0408 1216 CDD Hr-like 644 800 - -
Alju09g0408 1216 ProSiteProfiles Zinc finger CTCHY-type profile. 1046 1109 IPR017921 -
Alju09g0408 1216 SUPERFAMILY CHY zinc finger-like 973 1037 IPR037274 GO:0008270
Alju09g0408 1216 SUPERFAMILY RING/U-box 1109 1156 - -
Alju09g0408 1216 CDD RING-H2_Pirh2-like 1109 1152 - -
Alju09g0408 1216 Pfam CHY zinc finger 981 1056 IPR008913 GO:0008270
Alju09g0408 1216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1103 1154 IPR013083 -
Alju09g0408 1216 CDD Hr-like 34 163 - -
Alju09g0408 1216 FunFam Zinc finger protein-related isoform 1 1105 1154 - -
Alju09g0408 1216 Pfam Hemerythrin HHE cation binding domain 640 801 IPR012312 -
Alju09g0408 1216 Pfam Hemerythrin HHE cation binding domain 39 165 IPR012312 -
Alju09g0408 1216 Pfam Hemerythrin HHE cation binding domain 293 425 IPR012312 -
Alju09g0408 1216 Pfam Zinc-ribbon 1157 1214 IPR039512 -
Alju09g0408 1216 ProSiteProfiles Zinc finger CHY-type profile. 974 1043 IPR008913 GO:0008270
Alju09g0408 1216 SMART ring_2 1110 1151 IPR001841 -
Alju09g0408 1216 Pfam Ring finger domain 1109 1152 IPR001841 -
Alju09g0408 1216 Gene3D nmb1532 protein domain like 30 183 - -
Alju09g0408 1216 Gene3D nmb1532 protein domain like 295 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0408 Alju-ChrAlju09 5846769 5854845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0408 30 1216 C2H2 Transcription Factor Family AT3G18290 61.818 0.0 1485