Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0377 ATGACGGTTTGTTTTTCGTTTTCTCTGAGTTTCCCTCTCTCACCAAACACTTTCTTTTTCCCTCCTAACCATGCTCCCTATAAAATCTCCCTCCCCCTACTCTCTCTCTCATATTCGTTTCTCTCTCTAAATAACACAGGACCAGCTTCACTCTCTCTTCTTGACTCGCAAGTTGAATCTTGTATAGCGAAAATGCATAATAAGGAAGGTTGCTCTTCTCCTAATGGCGGAGCCGGAACAAGCATCGCTACTTCTGGTCAAATGCAGTCGAATAGCGCCATTTATAGTGCCATCTACTCCACTCTGTTTTCTGACCAACCATCCCTGTCTGCGACAGACAATGTCAATCTCTCGCTTCACTCGTACGAAGGAAACGCTCCCTTGAAGTACAGTGACTCGATGATTCAGAGTCCCCTGTACGACTCCTGTGCCGTACAGAATCATCAAGATATGGTGAACCGCCAAAGCATGTGGCTAAATCGCATAGCCGAAACCTCAAAGGAGATCGAGGCTCTGCGGCAGGAGAACAGCCAACTTCGGGCTGCGAACAGGGAGCTAAACAACCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGGTCCTCGGGTCAAACAGAAGCATTTGACGTTATAAATGGGTTTCGTGGCTTACGAATTGAGGACAATTTCGGGGATGGGAAAGAGAACTGTGAGAATTGGAATAAGGATCAAGAGGCTTTGAACGAGAGCCCAACAAGCGTGATTGAGAATACTGTCGAAGTGGAAAGGTTCTCGCTGCCCAAGAGTATATCTGTAAGGTCAAATGGGTACTTGAAGGTTGCTCAGGCTGCAACCGGTGGTGCCAGCAATGGAAGTCGCACCAAGGGCGCTACTCGGCCGCGCACATCTTTGACTCCAACTGAAGTCGTTCAAAAGGTATATGTGCGTGGAGGGAAGAAGGAGGAGGAGCCTCTGGAAATGGTGGTGTATAACCAAGGCATGTTCAAGACGGAGCTCTGCAACAAATGGCAGGAGACAGGGACATGCCCCTATAAGGATCAGTGCCAATTCGCTCATGGTATTGATGAACTCCGCCCAGTCATACGCCATCCACGCTACAAAACTGAGGTTTGCAGGATGGTCCTTGCTGGTGTTGTATGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATAGCACAGCCTAAGCCCAGCAGGCCAATGAACCTGCACAGATAA 1251 0.4868 MTVCFSFSLSFPLSPNTFFFPPNHAPYKISLPLLSLSYSFLSLNNTGPASLSLLDSQVESCIAKMHNKEGCSSPNGGAGTSIATSGQMQSNSAIYSAIYSTLFSDQPSLSATDNVNLSLHSYEGNAPLKYSDSMIQSPLYDSCAVQNHQDMVNRQSMWLNRIAETSKEIEALRQENSQLRAANRELNNQLSLLIQVSVQNQLDGSSGQTEAFDVINGFRGLRIEDNFGDGKENCENWNKDQEALNESPTSVIENTVEVERFSLPKSISVRSNGYLKVAQAATGGASNGSRTKGATRPRTSLTPTEVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIDELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKPSRPMNLHR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0377 416 FunFam Zinc finger protein 36, C3H1 type-like 1 365 401 - -
Alju09g0377 416 Gene3D - 365 401 - -
Alju09g0377 416 Gene3D - 326 364 - -
Alju09g0377 416 PANTHER CCCH ZINC FINGER/TIS11-RELATED 148 404 IPR045877 GO:0003729
Alju09g0377 416 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 332 357 IPR000571 GO:0046872
Alju09g0377 416 FunFam zinc finger CCCH domain-containing protein 15-like 325 364 - -
Alju09g0377 416 SUPERFAMILY CCCH zinc finger 365 399 IPR036855 GO:0046872
Alju09g0377 416 SUPERFAMILY CCCH zinc finger 328 363 IPR036855 GO:0046872
Alju09g0377 416 ProSiteProfiles Zinc finger C3H1-type profile. 369 397 IPR000571 GO:0046872
Alju09g0377 416 ProSiteProfiles Zinc finger C3H1-type profile. 331 359 IPR000571 GO:0046872
Alju09g0377 416 Coils Coil 162 196 - -
Alju09g0377 416 SMART c3hfinal6 369 396 IPR000571 GO:0046872
Alju09g0377 416 SMART c3hfinal6 331 358 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0377 130 409 C3H Transcription Factor Family AT1G68200 53.125 1.53e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju09g0377 zf-CCCH 5.8e-10 CL0537