LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g0311	ATGCCATTCAGAGATTTTGTTCGTGAGCTCAGGGGAATTCGAGATGGCCTGGGTAATATATCTAGAAGAGGGATAGATGGCACACGTAATTATTGCCGTGGAAAATCTCTTATTGCACCTGAATTGTCATCACCAGCATCATCATCTTTGTTAGTGACTGAGCAGAGCCGCTGGGCTAACTTACCACCTGAGTTGTTATTAGACATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCCCGTAGGGCAGTTGTAGCCTGTGCCTCAGTTTGTAGGTCATGGAGAAAAATAACAGAGGAGGTGGTAAAGACACCAGAACAGTGTGGGTGGCTTACCTTTCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCAATACAGTGTTTTATAAAGAGAGAAAGGGCGACTTCAAAATATCGTTTATATCTTGGATTGAGCCCAGCTCTCTCTGGGGATATGAGCAAACTGCTACTGGCAGCAAAGAAGATAAGACGGACAACATGTACAGAATTTTTGATATCTTTGGTCGCAGATGATTTTTCTAAAGCAAACAATACTTATGTTGGAAAGCTGAGGTCTAATTTTCTAGGCACCAAGTTCATGATCTTGGATACTCAGCTTCCGCTTGACTCTTCCCTTCCATTGAATAGTAAATTGCAGCCAAGAATACATTCAAAGCAGGTTCTTCCAAGGGGGACTGCTGCGGCTGCAAAGAGTAATGTGGCCACCATATCTTATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGGTGTACAATGCATTCGATTCCCATATCTGCCATCCAAGAAGGGGGCACTGCTCCTACCCCTTTGAAGTTTACTCATGGCCTTGATGAGCATCTATCTACCCCGCACCCATCAAAAGGTGAAAAGCCAGGAGTTGAGTATGACTCCAATAGTGACAACAAGCCCCCAGAGTCGAACCACAATGTGGGGGAGCCTCTGATTTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTTCAGTGTTGGTGCTTAAATTTCAAGGGACGTGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTAGCAGCCGCAGAACCTCAACAAAATGTTTCAGTAGCAGAGCAAGATAGAGTAATACTGCAATTTGGGAAGATTGGAAAGGACATTTTCACCATGGATTATCGTTACCCCCTCTCTGCCTTTCAAGCTTTTGCCATCTGCTTGAGCAGCTTTGACACAAAACCTGCTTGCGAGTGA	1263	0.4513	MPFRDFVRELRGIRDGLGNISRRGIDGTRNYCRGKSLIAPELSSPASSSLLVTEQSRWANLPPELLLDIIQRVEASETSWPARRAVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERATSKYRLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFLISLVADDFSKANNTYVGKLRSNFLGTKFMILDTQLPLDSSLPLNSKLQPRIHSKQVLPRGTAAAAKSNVATISYELNVLRTRGPRRMRCTMHSIPISAIQEGGTAPTPLKFTHGLDEHLSTPHPSKGEKPGVEYDSNSDNKPPESNHNVGEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPQQNVSVAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g0311	420	CDD	F-box_AtTLP-like	58	102	-	-
	Alju09g0311	420	Gene3D	-	53	105	-	-
	Alju09g0311	420	SUPERFAMILY	Tubby C-terminal domain-like	107	420	IPR025659	-
	Alju09g0311	420	ProSitePatterns	Tub family signature 1.	348	361	IPR018066	-
	Alju09g0311	420	MobiDBLite	consensus disorder prediction	276	326	-	-
	Alju09g0311	420	SUPERFAMILY	F-box domain	55	121	IPR036047	GO:0005515
	Alju09g0311	420	Pfam	F-box domain	58	103	IPR001810	GO:0005515
	Alju09g0311	420	PANTHER	TUBBY-RELATED	48	418	-	-
	Alju09g0311	420	ProSitePatterns	Tub family signature 2.	405	420	IPR018066	-
	Alju09g0311	420	Pfam	Tub family	119	415	IPR000007	-
	Alju09g0311	420	Gene3D	Tubby Protein; Chain A	116	420	IPR025659	-
	Alju09g0311	420	PRINTS	Tubby superfamily signature	241	268	IPR000007	-
	Alju09g0311	420	PRINTS	Tubby superfamily signature	377	396	IPR000007	-
	Alju09g0311	420	PRINTS	Tubby superfamily signature	174	190	IPR000007	-
	Alju09g0311	420	PRINTS	Tubby superfamily signature	190	214	IPR000007	-
	Alju09g0311	420	PRINTS	Tubby superfamily signature	330	347	IPR000007	-
	Alju09g0311	420	PRINTS	Tubby superfamily signature	348	364	IPR000007	-
	Alju09g0311	420	PRINTS	Tubby superfamily signature	398	420	IPR000007	-
	Alju09g0311	420	MobiDBLite	consensus disorder prediction	291	310	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g0311	Alju-ChrAlju09	4713679	4715695	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g0311	33	420	TUB Transcription Factor Family	AT1G47270	64.975	2.61e-169	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Alju09g0311		Tub	4.4e-103	CL0395