Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0304 ATGACTAAGGACCATTCAAATTTTGTGAATTGTGTTAGATTTTCCCCTGATGGAACCAAATTCATAACTGTGAGTTCTGATACAAAGGGCATCATATATGATGGGAAGAGTGGGGACAAACTTGGTGAGTTGTCTGCAGAGGGTGGCCACAAGGGCAGCATATATGCTGTAAGTTGGAGTCCTGATAGTAAACAGGTGCTTACTGTGTCTGCTGATAAATCTGCAAAGATCTGGGATATTCTTGAGGATGGAAGTGGAAGTTTAAATACGACTTTATCGCGTTCTGAATCTGGTGGGGTGGAGGATATACTTGTTGGTTGTCTTTGGCAGAATAATCATCTTCTCACTGTCACCCTTGGTGGCATGATTAATGTATACTCAGCAACAGATTTAGATAAAACTCTTTTAACTGATGGAAGTGAAGCAATTGTAGGTGGACAAGATGGTAAGTTGCACGTATATTCTATCTCAGGAAATTCACTTACAGAAGAGAAGGTCCTTGAAAAACACCGAGGTGCTATGAGTGTGATAAGATATTCCCCAGATGTTACCATGTTTGCTTCAGCTGACTTGAATCGTGAAGCTGTTGTTTGGGACCGTGACTCTAAAGAGGTGAAGCTTAATAACATGTTATTTCACACTGCACGTATTAACTGCTTAGCTTGGTCACCTGATAACACCCTCATAGCTACTGGGTCACTGGATACATGTGTCATCATATATGAAATTGGAAAGCCAGCATCAAGCCGCAGAACCATAAAAGGAGCTCATTTAGGTGGAGTCTATGGGTTGGTTTTTATTGATAACGATAGCGTGGTCAGTTCTGGAGGAGATGGCTGTATTAGTGTTTGGAAATTGGCTTCAGAATAA 870 0.4115 MTKDHSNFVNCVRFSPDGTKFITVSSDTKGIIYDGKSGDKLGELSAEGGHKGSIYAVSWSPDSKQVLTVSADKSAKIWDILEDGSGSLNTTLSRSESGGVEDILVGCLWQNNHLLTVTLGGMINVYSATDLDKTLLTDGSEAIVGGQDGKLHVYSISGNSLTEEKVLEKHRGAMSVIRYSPDVTMFASADLNREAVVWDRDSKEVKLNNMLFHTARINCLAWSPDNTLIATGSLDTCVIIYEIGKPASSRRTIKGAHLGGVYGLVFIDNDSVVSSGGDGCISVWKLASE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0304 289 SUPERFAMILY WD40 repeat-like 3 286 IPR036322 GO:0005515
Alju09g0304 289 ProSitePatterns Trp-Asp (WD) repeats signature. 66 80 IPR019775 -
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 208 IPR001680 GO:0005515
Alju09g0304 289 Pfam WD domain, G-beta repeat 41 79 IPR001680 GO:0005515
Alju09g0304 289 Pfam WD domain, G-beta repeat 4 28 IPR001680 GO:0005515
Alju09g0304 289 Pfam WD domain, G-beta repeat 256 285 IPR001680 GO:0005515
Alju09g0304 289 Pfam WD domain, G-beta repeat 213 241 IPR001680 GO:0005515
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 289 - -
Alju09g0304 289 Gene3D - 1 132 IPR015943 GO:0005515
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats profile. 2 43 IPR001680 GO:0005515
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 243 - -
Alju09g0304 289 Gene3D - 137 285 IPR015943 GO:0005515
Alju09g0304 289 SMART WD40_4 37 79 IPR001680 GO:0005515
Alju09g0304 289 SMART WD40_4 204 242 IPR001680 GO:0005515
Alju09g0304 289 SMART WD40_4 160 199 IPR001680 GO:0005515
Alju09g0304 289 SMART WD40_4 246 285 IPR001680 GO:0005515
Alju09g0304 289 SMART WD40_4 1 34 IPR001680 GO:0005515
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 80 - -
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 80 IPR001680 GO:0005515
Alju09g0304 289 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 137 286 - -
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 289 IPR001680 GO:0005515
Alju09g0304 289 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 243 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0304 Alju-ChrAlju09 4610099 4612547 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0304 1 278 Eukaryotic Initiation Factors Gene Family AT2G46290 22.884 5.65e-09 54.7