Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0271 ATGAGGAAGCCTTGCTGTGATAAGCAAGACATGAACAAAGGAGCTTGGTCTAAACAAGAAGACCAAAAACTTGCTGATTATATCAACAAACATGGCGAAGGTTGCTGGAGTACTCTTCCTCAAGCTGCAGGATTACTTCGCTGCGGCAAAAGTTGCAGGCTGAGATGGATAAATTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGACGAAGAAGATCTCATCATCAAACTTCATGCCCTGCTTGGCAATAGGTGGTCTCTGATAGCTGGAAGATTACCAGGAAGGACAGACAATGAAGTAAAAAATTATTGGAACTCTCATCTAAGAAGAAAGCTCATCAACATGGGAATAGATCCAAATAATCATAGACTCCCTCCCAAATTCCCTTCTCTTTCACATCATCATCATCAAAATCAAACAACTTTTGGTAGCTCAGCTTCATCAGGCTTGAACAAGAAGAAACGCAAAGGCAATCTCAACAACAACAATAATATTGAGCCAATAACAAAGAAGCCTAAAACTACTACTGGTAGTGCTGGTAATTATGAACAAGTTTCAGATGATGCAAGTGGCTTAGAAGATGAGTCCTCTGGCTTATTGCCTGATCTAAACCTTGATCTCACAATCAACATTCCTTCTTCAACCATATTACCCACTAGTTCTGCTTATGATCATGAAGACAATAATCAAAAGCCAATGATTCATCAACATGAATCTAAGTCACCAAGGACTATGCAATTAGCTTCCTCTCCAACCCTACTTCTGTTTCAGTGA 783 0.3985 MRKPCCDKQDMNKGAWSKQEDQKLADYINKHGEGCWSTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNHRLPPKFPSLSHHHHQNQTTFGSSASSGLNKKKRKGNLNNNNNIEPITKKPKTTTGSAGNYEQVSDDASGLEDESSGLLPDLNLDLTINIPSSTILPTSSAYDHEDNNQKPMIHQHESKSPRTMQLASSPTLLLFQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0271 260 MobiDBLite consensus disorder prediction 237 260 - -
Alju09g0271 260 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Alju09g0271 260 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Alju09g0271 260 CDD SANT 68 111 IPR001005 -
Alju09g0271 260 SMART sant 65 113 IPR001005 -
Alju09g0271 260 SMART sant 12 62 IPR001005 -
Alju09g0271 260 CDD SANT 15 60 IPR001005 -
Alju09g0271 260 FunFam MYB-related transcription factor 12 65 - -
Alju09g0271 260 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Alju09g0271 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Alju09g0271 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 216 - -
Alju09g0271 260 FunFam MYB transcription factor 67 128 - -
Alju09g0271 260 Gene3D - 13 65 - -
Alju09g0271 260 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Alju09g0271 260 MobiDBLite consensus disorder prediction 242 260 - -
Alju09g0271 260 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Alju09g0271 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Alju09g0271 260 MobiDBLite consensus disorder prediction 121 200 - -
Alju09g0271 260 Gene3D - 68 143 - -
Alju09g0271 260 MobiDBLite consensus disorder prediction 135 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0271 Alju-ChrAlju09 3677793 3679771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0271 2 215 MYB Transcription Factor Family AT4G38620 54.505 6.40e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju09g0271 Myb_DNA-binding 1.9e-14 CL0123