Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0270 ATGGCCGAAGGAGAAGGCGGCGACGAGGACCGTACGCCGGAACTCCTAGGCCTGGTTCATGACATTGCTGCAATGTATGGCGGGGCAGCTTGTGGTTCTTCCTCCTCCTCCGCCATTGCCGCCGATGCTGTGTTCAAGAAGGATTGCATCGATCTGGTTCGTCGGATCTCACTTCTCTCCCATTTGTTCGAGGAGATTAGGGATTTAAATGCTGTTAATTCTGCTGAGTTGGATGCTTCCACTTCTTCCAATTGCTCTGCCTCTTCCTGGTCCTCTGATCTGATGTTTGCTCTTCAATCTGCTGAGCGCCTTCTTTCCGTCGCTAGTAACTTTCATTACAATTGCACTTCTGATGAAGCTGCCAAGACTATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTAGAGAAACTTTTAAGCAGATTACCATATGACCATTTGGACATATCAGAGGAAGTTAGAGAACAGGTGGAGTTGGTGAGAACACAATTGAGTCGAGCCTCTGAAAGATATGGATTTATGATATCCAATATGTCATCTTGTGACATATTCCAGCAACTGGCTGAAAACGTTAGTCGGGTTAATGGTAAATCTAGAAATCAGTTGCATAAGCAAAACAGCTGTCCTGAGTATTTACTAAAACTGGACAACATTCCTAAAAGCAATGTAGAGAAAAGATGCAGCACATGTCAGACCAGTCTTCACTTGGAAAGGGCAAGGAGCATCCCTGTCTCTTCGGAGGCTTCCTTATCAAATGTGATTCATCCTGAAAGTCAAGAAACTTCCGAGAAGGGCCTAGCCAGAGTTAAAACACATCAAACTATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCATTGGAATTAATGAGGGATCCTGTTATTGTGGCCACAGGCCAGACGTATGAGCGGTCTTACATACAGAGATGGATAGCATGTGGAAATAAAACTTGTCCGAAAACTCGCCAGAAGTTGGGAAATTTGAACTTAACACCCAATTATGTTTTAAGGAGCCTTATCAATCAGTGGTGCATAGATAACAACTTTGAGCATCCAAGGGGACTAACCCATGGCAAGCTAAAACAGAGTGATGGATCGTTTAGAGATGTTACCGGTGACATGGCAACCATTGAGGCTCTGGTCTCAAAGCTCTCAAGCCATTCCATTGAGGATTGTAGAGCAGCAGTCACTGAAATCCGATCACTTTCAAGACGGAGCACAGACAATAGAATACTAATTGCTGAAGCTGGAGCGATTCCAGTTCTGGTCAACTTGTTAACATCAGAAGATGTACTGACACAAGAGAATGCAGTGACTTCAATTCTCAACCTCTCTATATATGAAAACAACAAGGGACTTGTAATGCTTGCAGGTGCCATCCCATCAATTGTGCAAGTTCTTAGAGTTGGAAGCATGGAAGCAAGAGAAAATGCTGCAGCAACCCTTTTTAGTTTATCGTTTCCAGATGAGAACAAAATAATAATTGGTTCCTCAGGAGCTTTGCCTCCTTTGATAGAATTGCTCCAAAATGGAAGCCCTAGAGGGAAGAAGGATGCAGCATCAGCATTATTCTACTTATGCATTAATGAAGGGAACAAGGGTAAGGCCATTAGATCAGGGATCATCCCAGCATTGTTGAAGAAGCTTACAGATTCAAGAAAATCAATGGTTGATGAAGCCCTAACAATAATGTCAGTTCTTGTCAGCCACCATGGGGCAAAGGCTGCTATTGTTAACGCCGGCACTATGCCTGTCTTGATCGATCTTTTGAGTACAGGTCTGCCTCGACAAAAAGAGAATGCAGCCACCATTTTGTTTTCTTTATGTAAGAGAGATGCTAATAATCTTGCTTGTTTAAGTACTCTTGGTGGTGTCAAGCCATTGACTGAACTTGCTCTCAGTGGCACTGAGAGAGCTAAACGGAAGGCCACTTCACTATTGGAACTCATTCGCAAGTCCCAGGAGCTTTGA 1971 0.4338 MAEGEGGDEDRTPELLGLVHDIAAMYGGAACGSSSSSAIAADAVFKKDCIDLVRRISLLSHLFEEIRDLNAVNSAELDASTSSNCSASSWSSDLMFALQSAERLLSVASNFHYNCTSDEAAKTIVFQFQCVTWKLEKLLSRLPYDHLDISEEVREQVELVRTQLSRASERYGFMISNMSSCDIFQQLAENVSRVNGKSRNQLHKQNSCPEYLLKLDNIPKSNVEKRCSTCQTSLHLERARSIPVSSEASLSNVIHPESQETSEKGLARVKTHQTIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIACGNKTCPKTRQKLGNLNLTPNYVLRSLINQWCIDNNFEHPRGLTHGKLKQSDGSFRDVTGDMATIEALVSKLSSHSIEDCRAAVTEIRSLSRRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLVMLAGAIPSIVQVLRVGSMEARENAAATLFSLSFPDENKIIIGSSGALPPLIELLQNGSPRGKKDAASALFYLCINEGNKGKAIRSGIIPALLKKLTDSRKSMVDEALTIMSVLVSHHGAKAAIVNAGTMPVLIDLLSTGLPRQKENAATILFSLCKRDANNLACLSTLGGVKPLTELALSGTERAKRKATSLLELIRKSQEL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0270 656 PANTHER U BOX DOMAIN-CONTAINING 46 651 - -
Alju09g0270 656 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Alju09g0270 656 Gene3D - 355 570 IPR011989 -
Alju09g0270 656 SUPERFAMILY RING/U-box 276 351 - -
Alju09g0270 656 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Alju09g0270 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Alju09g0270 656 FunFam RING-type E3 ubiquitin transferase 274 350 - -
Alju09g0270 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Alju09g0270 656 FunFam RING-type E3 ubiquitin transferase 362 656 - -
Alju09g0270 656 SUPERFAMILY ARM repeat 376 650 IPR016024 -
Alju09g0270 656 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Alju09g0270 656 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Alju09g0270 656 CDD RING-Ubox_PUB 278 330 IPR045210 -
Alju09g0270 656 SMART arm_5 447 487 IPR000225 GO:0005515
Alju09g0270 656 SMART arm_5 529 569 IPR000225 GO:0005515
Alju09g0270 656 SMART arm_5 570 610 IPR000225 GO:0005515
Alju09g0270 656 SMART arm_5 406 446 IPR000225 GO:0005515
Alju09g0270 656 SMART arm_5 488 528 IPR000225 GO:0005515
Alju09g0270 656 Pfam U-box domain 277 346 IPR003613 GO:0004842|GO:0016567
Alju09g0270 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Alju09g0270 656 Coils Coil 150 170 - -
Alju09g0270 656 Gene3D - 571 650 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0270 Alju-ChrAlju09 3649567 3652633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0270 43 653 U-box Gene Family AT1G23030 57.303 0.0 657
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g0270 09 3649567 3652633 Alju09g0270 09 3649567 3652633 ECH