Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0254 ATGGCTAGCAGTAACAGTGAGGAGGTTATCGCAAATATGGAGGAAGGTGAAACTAATAAAACCTCAACAGGATCTGGTTTTTGTGGTTCTTCTTCCACAGTTCAAATCATACAGAAGGTAATTGCAGAGATAATAGGGACATACCTGGTGGTATTTGCAGGGTGTTGTGCAGTGGTTTTGAATAATCTAGATGGGAAAGTTACATTTCCTGGAGTCTGTCTAGTTTGGGGCTTAATAGTAATGATAATGGTTTACACGGTGGGGCACATCTCCGGCGGCCACTTTAATCCGGCGGTGACGGTGGCGTTCACTATATTCCGGCAGTTTCCATGGAGGCAGGTACCACTGTACATAATAGCACAGTTGATGGCATCAATACTGGCGAGTGGGTCGCTTTACATGTTGTTTGAGGTAAACGACAAGTCGTATTTTGGGACGTTGCCGTCTGGATCAAACGTTCAGTCGCTTATAATGGAGATCATTGCTTCTTTCTTGTTGATGTTCGTCGTTTCTGCTGTTGCCACTGATACTAGAGCTATCGGAGAATTGGCAGGAATTGCAGTTGGCATGACGATTACTGTGGATGTCTTCATTGCCGGGTCGATATCAGGAGCATCAATGAACCCAGCAAGGAGTATTGGGCCTGCAATAGTGATGCACAAATATGAGTCGATATGGGTTTATATAGTGGGCCCATTTATTGGCACTATTCTTGGTGGCCTTGCCTATAGCCTTATTAGATTCACTGATAAACCTCTCCAACAACTCACAAAATCCCCTTCTCTCTTTAAAAGCTCCTCCACCCACTCCAAGTAA 816 0.4449 MASSNSEEVIANMEEGETNKTSTGSGFCGSSSTVQIIQKVIAEIIGTYLVVFAGCCAVVLNNLDGKVTFPGVCLVWGLIVMIMVYTVGHISGGHFNPAVTVAFTIFRQFPWRQVPLYIIAQLMASILASGSLYMLFEVNDKSYFGTLPSGSNVQSLIMEIIASFLLMFVVSAVATDTRAIGELAGIAVGMTITVDVFIAGSISGASMNPARSIGPAIVMHKYESIWVYIVGPFIGTILGGLAYSLIRFTDKPLQQLTKSPSLFKSSSTHSK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0254 271 Pfam Major intrinsic protein 32 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Alju09g0254 271 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 SUPERFAMILY Aquaporin-like 34 255 IPR023271 -
Alju09g0254 271 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju09g0254 271 PANTHER AQUAPORIN NIP2-1 10 257 IPR034294 -
Alju09g0254 271 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0254 Alju-ChrAlju09 3404787 3407419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0254 6 265 Major Intrinsic Protein MIP AT5G37820 60.456 1.35e-115 333