LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g0200	ATGATCAAATCCAAAAGTTTTCTTCAAAGTGTTATGAAGCATCTCAAATTCGGTTCAAGAAGAGAGAGACAGAACGAAGACGACGTTCACAGGATCGCCGCCAAGGAGCAGAAGGTGTTTTCCTACGAAACGTTAGTTTCAGCGACGAAGAATTTCAATTCTCATAACAAGCTAGGCGAGGGAGGATTCGGACCAGTTTACAAGGCAAGATCTGGGAAGCTAGAAGATGGAAGAGAGATAGCAGTGAAGAAGCTATCAGTGAGATCAAACCAAGGGAAGAAGGAGTTCATCAATGAGGCAAAATTGTTGGCGCGTGTGCAGCACCGCAATGTTGTGAATCTGTTGGGCTATTGTGTGTATGGTTCCGAGAAGCTTCTTGTGTACGAGTATGTTCCTCATGAGAGCCTTGACAAAATCCTCTTCAAATCAGATAGGAGAAAAGAGCTTGACTGGCAAAAGAGGCTTGGAATAATAACAGGAATAGCTAGAGGGTTGCTTTATCTTCACGAAGATTCACACGACTGCATAATTCACAGAGATATAAAAGCCAGCAATGTTTTGCTTGACGATAAATGGAACGCTAAGATAGCAGATTTTGGTATGGCTCGTCTCTTCCCTGAAGATGAAACCCACGTCAAAACTCGTGTGGCTGGAACCAATGGATACATGGCTCCAGAATATATAATGTATGGACGTTTATCAACGAAAGCTGATGTATTTAGTTTTGGAGTTCTGATGTTGGAGATCATTAGTGGTCAACGAAACTTATCATTTAACTTGGATGTGGATGAACAGAACCTTATCGACTGGGCATACAAGCTTTACAAAAAAGGACGAAGCTTAGAAATCATGGACAGTGCAATAGCAGCTTCAGCAGTGCCTGAACAAGTAACAATGTGCATTCAATTAGGCCTGCTATGCATTCAAGGCGATCCCAGCCTCCGCCCCACCATGCACCGGGTGTTGGTGGTGTTGTCGAAAAAGCCGGGCCACTTAGAAGAACCAATGAGACCCGGTGTGCCGAGTTCATCAAGATACCGAAAACATCATAATCCTTATACATTGTCTTCCACAGTTGATAGTAGTTCTACTGGATATAGTTCACATACTGGTACTTCAAGCAATATCTACGACACTAGGTCAACCGCAACGGCGACCACAGCTGCCACAGCCGCAACAGCAACCACCTCAACTTCCAGAGAATTAGACCCGCGGGGAAAACGTGTAATTGATGAGGGTTAA	1242	0.4404	MIKSKSFLQSVMKHLKFGSRRERQNEDDVHRIAAKEQKVFSYETLVSATKNFNSHNKLGEGGFGPVYKARSGKLEDGREIAVKKLSVRSNQGKKEFINEAKLLARVQHRNVVNLLGYCVYGSEKLLVYEYVPHESLDKILFKSDRRKELDWQKRLGIITGIARGLLYLHEDSHDCIIHRDIKASNVLLDDKWNAKIADFGMARLFPEDETHVKTRVAGTNGYMAPEYIMYGRLSTKADVFSFGVLMLEIISGQRNLSFNLDVDEQNLIDWAYKLYKKGRSLEIMDSAIAASAVPEQVTMCIQLGLLCIQGDPSLRPTMHRVLVVLSKKPGHLEEPMRPGVPSSSRYRKHHNPYTLSSTVDSSSTGYSSHTGTSSNIYDTRSTATATTAATAATATTSTSRELDPRGKRVIDEG	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g0200	413	ProSiteProfiles	Protein kinase domain profile.	52	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g0200	413	MobiDBLite	consensus disorder prediction	332	413	-	-
	Alju09g0200	413	FunFam	Cysteine-rich receptor-like protein kinase 10	132	337	-	-
	Alju09g0200	413	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	20	375	-	-
	Alju09g0200	413	SMART	serkin_6	52	325	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju09g0200	413	Pfam	Protein tyrosine and serine/threonine kinase	54	322	IPR001245	GO:0004672\|GO:0006468
	Alju09g0200	413	CDD	STKc_IRAK	58	327	-	-
	Alju09g0200	413	SUPERFAMILY	Protein kinase-like (PK-like)	37	353	IPR011009	-
	Alju09g0200	413	MobiDBLite	consensus disorder prediction	347	400	-	-
	Alju09g0200	413	Gene3D	Phosphorylase Kinase; domain 1	13	130	-	-
	Alju09g0200	413	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	176	188	IPR008271	GO:0004672\|GO:0006468
	Alju09g0200	413	FunFam	Cysteine-rich receptor-like protein kinase 10	16	130	-	-
	Alju09g0200	413	Gene3D	Transferase(Phosphotransferase) domain 1	131	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g0200	Alju-ChrAlju09	2505506	2509341	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g0200	40	345	Receptor kinase-like Gene Family	AT4G11530	51.299	6.59e-105	323

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Alju09g0200		PK_Tyr_Ser-Thr	8.5e-51	CL0016