Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0197 ATGTTTCCGGGTTCTGAAGTATGTCATTATGATTTGGAAGAAAGACAGGAGAAGGGGTACAGTAGGGCCAGGGATTTGGACAGTGAGGAGCTCCTTGTTCAGTTGCCTGCTCTGCAGCAGCTGCTCTATCGGCTTATTGGTTGCCGGTTTTTTGAGATGCCCAGACATGAGGGCATTATAGCCTTTGATGTCTATAAACGTGCTGGGCTTAAGCTTCAGTTGACATACAGGCCAGAAGAAGCTTCGGCTTCAGAAGACAGCGAATTACCTGTTGAAGAACAGGAGCCATCAATAGGAACTGCATCAACTTTTAAAATTGAATATCTCATGGGAATCGATGATGACCCTCCCCAAGATTCAACTCAATACTCTGCCTTACTGGCATTTGAAGATTACTTTAGAACAGAGGATGACCCTCCCCAAGATTCATCTCAACATCACTCTGCTTTGCTGGACCCTTTTGAAGATTACTCTGGGGAAGTTCCTACTTCCCAATCTTTGGAAGTTCCTGTTTCTACTTCTCAATCACTTCAAAATGTTTCAAATCAGCATGATGTTCATGCCCAACAGTATCAACCGAAGCCAACTCCTCTGCAGTCTTTTGGCCATAATAACCAAATCATCCAATTACCAACTCCCCCAAATAAGAGAAGGCATGATGAATCGCCACGATCACTCACTTCTGATGTTCAACCTCTACAAGATAATCTGAGTGACAGTGTTGAGCCTTCAAAGCCTACACCACATTCAACTCAACAACAACCTCCTCCTACTTCACAGTGTTTGGAAGTTCCTATTTCCACTTCTCAATCACTTCAAAATGTTTCAACTCAGCAACATGTTCATGCCCATCAGTATCAACCCAAGCCAACTCCTCTGCAGTCTTTTGACCGTAATAACCAAATCATCCAATTACCAACTCCCCCAAATAAGAGGCAGAAGATATCAAGCAGGCGATGCGGATGTAAGGCCAGTAAATGTCAAAAGCGTTACTGTGAATGTTATGCTGCTGGAGAAGTATGTGGCGAAAACTGTAGCTGCGAAGGTTGTTTTAACAAATCGGAACATGAAGCAACAGAGAAAAGGAACAGCAATATGTGTCATAATCCGCAGGCAGTATATGGAGCACCTACCTTGAATTCATTTGCTCCACCGCCAGCAAATTCATTTACCACATCATGCAACATCTCTCCACCGCAGCCAGTCCAAATGGCCACGATGGCTCAACATCCGGCGAATCCATTTGTCTTATCAAGCAACATCTTTCCACTGCACGCAGTCCGAATGGCTGATCTGTCTCAGCAACAGGCCAATCCATTTGCCACCAGCAACATCTCTCCTCTGCCAGCCGTCCAAATGGCCGTCATGGCTCGACCGCGAGCAAATCCCGGCACAACTTATCAACCACAGCAGCAACATATGTTGATGAACCCAACCAATCCACAACAAATGGATCATAGGGCGTTTTCTGTGAACTCTGGTTCTAGATCACCATTCATGCAAATACCTCCAAGGCCTAGAGAAATTATTTTCAAGTACTTTGATCCAGATTGA 1554 0.4472 MFPGSEVCHYDLEERQEKGYSRARDLDSEELLVQLPALQQLLYRLIGCRFFEMPRHEGIIAFDVYKRAGLKLQLTYRPEEASASEDSELPVEEQEPSIGTASTFKIEYLMGIDDDPPQDSTQYSALLAFEDYFRTEDDPPQDSSQHHSALLDPFEDYSGEVPTSQSLEVPVSTSQSLQNVSNQHDVHAQQYQPKPTPLQSFGHNNQIIQLPTPPNKRRHDESPRSLTSDVQPLQDNLSDSVEPSKPTPHSTQQQPPPTSQCLEVPISTSQSLQNVSTQQHVHAHQYQPKPTPLQSFDRNNQIIQLPTPPNKRQKISSRRCGCKASKCQKRYCECYAAGEVCGENCSCEGCFNKSEHEATEKRNSNMCHNPQAVYGAPTLNSFAPPPANSFTTSCNISPPQPVQMATMAQHPANPFVLSSNIFPLHAVRMADLSQQQANPFATSNISPLPAVQMAVMARPRANPGTTYQPQQQHMLMNPTNPQQMDHRAFSVNSGSRSPFMQIPPRPREIIFKYFDPD 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0197 517 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 164 359 IPR044522 GO:0003700
Alju09g0197 517 ProSiteProfiles CRC domain profile. 316 372 IPR005172 -
Alju09g0197 517 SMART CXC_2 315 356 IPR033467 -
Alju09g0197 517 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 318 353 IPR005172 -
Alju09g0197 517 MobiDBLite consensus disorder prediction 226 262 - -
Alju09g0197 517 MobiDBLite consensus disorder prediction 154 262 - -
Alju09g0197 517 SUPERFAMILY GAT-like domain 21 69 - -
Alju09g0197 517 MobiDBLite consensus disorder prediction 159 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0197 Alju-ChrAlju09 2456067 2464768 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0197 301 357 CPP Transcription Factor Family AT4G14770 52.381 5.34e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Alju09g0197 TCR 6.6e-10 No_clan