Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0196 ATGTTCAGTGGGGTTCCTGAAATTAAGGTGCATTTGGATCTTGTAGAGAAAGAGTGTAGGATTTGTCACATGGGTTTGGAAAGTGAAAACCATGAATTCGGAGTTCCAATTGAATTGGGTTGTTCTTATAAGAATGATCTTGCTTCTGCTCATAAACTCTGTGTTGAAACTTGTTTCAAGATTAAAGGGAACATGAATCTTCATTTTTGCTTCTTTATGGTTTTCTCTTTATCCATATCAAGTGGAGACTTGACCCCATCAACCTTTAATATGTTTATGAATTTTTTGCTTGCTGATGTTGGAACGTTTGAGGTGATGAATGGAGAGGTAGCAAGAGCAAGAAATGTTTATGAGAGGGCAATGGAGAAGGTGGCTAATGATCAAGAAGCAGAGCGGCTTTTTGTTGCATTTGTCGAGTTTGAGGAAAGGTGTGAAGAAACAGAGCGTGCAAGGAGTATTTATAAATTTTCCCTTGATCATATTGTCAAGGGAAGAGCTAAAGATTTGTACCGGAAGTTTGTGGCCTTTGAAAAGCAGTATGGTCATGTTGTATGGGAAAGAATTAGCAATGATTTTTGTTAA 582 0.3763 MFSGVPEIKVHLDLVEKECRICHMGLESENHEFGVPIELGCSYKNDLASAHKLCVETCFKIKGNMNLHFCFFMVFSLSISSGDLTPSTFNMFMNFLLADVGTFEVMNGEVARARNVYERAMEKVANDQEAERLFVAFVEFEERCEETERARSIYKFSLDHIVKGRAKDLYRKFVAFEKQYGHVVWERISNDFC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0196 193 Gene3D Tetratricopeptide repeat domain 78 190 IPR011990 GO:0005515
Alju09g0196 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Alju09g0196 193 SMART ringv_2 18 66 IPR011016 GO:0008270
Alju09g0196 193 Coils Coil 110 130 - -
Alju09g0196 193 SUPERFAMILY TPR-like 105 182 IPR011990 GO:0005515
Alju09g0196 193 SMART hat_new_1 108 143 IPR003107 GO:0006396
Alju09g0196 193 SMART hat_new_1 145 179 IPR003107 GO:0006396
Alju09g0196 193 PANTHER ZINC FINGER, RING-CH-TYPE 16 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0196 Alju-ChrAlju09 2443581 2445971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0196 4 70 C3H Transcription Factor Family AT5G05830 62.687 2.30e-22 88.2