Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0156 ATGGTAAAATCGTCTGATAATGGTTTCGGTTCTGTGGCGCCTTTCCTGAAAAAATGTTATGAGATGGTGGACGATGAGTCCACCGATTCACTCATATCCTGGAGCAAAAGCAATGATAGTTTTATCATATGGGACATGACTGAGTTCTCCGTGAGTTTGCTTCCCAAGTATTTCAAGCACAACAATTTCTCCAGTTTCATCCGGCAGCTTAATATTTATGGTTTCAGGAAAACTGATACAGATCGCTGGGAATTTGCCAATGATGACTTCATCAGAGGTCAAAAGCATTTACTAAAGAATATATTGAGAAGAAAACATCCACATTATGCGGATCAGCGTAAGCCATTACAGCAGCAAGAGAATCGCGATGTGCCTTCTCAAGAAGTTAAACACTACGACCTTTGGAAAGAAGTTGAGAATTTGAAAGTTGATAAAAATGCACTCACACAGGAGTTGGTTAAACTTAGTCAGCACCAGGAATCATCTAAGGACAAGTTGCTGCTCCTGACCAATCGGCTTCAAGGAATGGAAAAGAATCAACAACAGATGTTATCATTCTTGGTCATGGCCATGCAAATCCCTGGGTTCATGGTTCAGCTGCTTAAGCCCAAGGAAAACAGTTGGCGTACGACTGAGACAGGCAATATGTTGGAACACAGTGTCGAAGATGTTCAGCCAGTTGCTTCTGATGGGATGATAATGAAGTATCAACCACCCTTGAGTGGAAAATTGAAGCCTGTGGTTACACCATCTCGTGTTTCAGATGAGCAACCTGAACCCCATCTCTGTACTGATGGGTTGAAAGATTATTTCATCAATTCTGACTTCTTGAAAGAACTCATGGATGAAAATTTGTGTCAAATAGATACTCATTCTCCATTTAATCTACCAAATTCACCCGATGATAATGCCTGGGAACAGCTTCTTTTAGCAAGTCCCTTCACTGAAAATGAAGACTCAAATCTGGAAAGTGACGAGCCCACCAACAATGGAATGGAAATCGAGCCTGCTATATGCGAATCACTGTTTGATAAATTCCAAAACTGTGTTGGGTTGATGCCAGAAATGGAAAAAACTCAGAAGAGTGGATTGGAAGTATCTGCTCATGGTGTTCATCCGGAGAAGGTGCAGAGTTTGGAATCTCTAACTGAGGAAATAGAACTTTTGGCTGCTGAAGCAAATGAGAAATAG 1191 0.4123 MVKSSDNGFGSVAPFLKKCYEMVDDESTDSLISWSKSNDSFIIWDMTEFSVSLLPKYFKHNNFSSFIRQLNIYGFRKTDTDRWEFANDDFIRGQKHLLKNILRRKHPHYADQRKPLQQQENRDVPSQEVKHYDLWKEVENLKVDKNALTQELVKLSQHQESSKDKLLLLTNRLQGMEKNQQQMLSFLVMAMQIPGFMVQLLKPKENSWRTTETGNMLEHSVEDVQPVASDGMIMKYQPPLSGKLKPVVTPSRVSDEQPEPHLCTDGLKDYFINSDFLKELMDENLCQIDTHSPFNLPNSPDDNAWEQLLLASPFTENEDSNLESDEPTNNGMEIEPAICESLFDKFQNCVGLMPEMEKTQKSGLEVSAHGVHPEKVQSLESLTEEIELLAAEANEK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0156 396 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g0156 396 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g0156 396 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g0156 396 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 239 IPR027725 -
Alju09g0156 396 Gene3D - 9 105 IPR036388 -
Alju09g0156 396 FunFam Heat shock transcription factor 1 9 105 - -
Alju09g0156 396 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju09g0156 396 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Alju09g0156 396 Coils Coil 138 158 - -
Alju09g0156 396 Coils Coil 376 396 - -
Alju09g0156 396 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0156 Alju-ChrAlju09 1689854 1693818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0156 1 391 HSF AT1G67970 45.387 3.51e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju09g0156 HSF_DNA-bind 4.9e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g0156 09 1689854 1693818 Alju09g0156 09 1689854 1693818 ECH