Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0153 ATGGCAGAAACATGCGGAAGCTGTAGATCTTGGGTCGATGACGTTTACTGGACCCATTTCAAATTCACCCATTTTGCTCAGCGTCTCCCTCCTGGTTTTGATCAACACCTTGCACTTCCCAAAAGGTTTTCGGATAGCTTGAAAAGGAAATTGCCAGATAACGTGACCCTTAAAGGTCCTGGTGGTGCTGAGTTGACTGTCAGATTGTCAACTAGAGATGATATATTGCACTTCACGAATGGTTGGCAACAATTTGCGCAAGATCACTTTTTGGAAGAGAATGATCTCCTGATCTTCAAGTACAATGGTGAATCACAGTTTGATGTTCTAATATTTGACAAGAAGAACTTATGTGAGAAGGTGGCTTCTTATTTTGTTCGGGACAGTGGACAAACAAATCAGAGAAACACAGATAATAACTGTTTGGAAGAAGAAAATATCCCTACTACTAATATCGATGTCAAAGGGCCTTCGCCTAAGAAATCTGCACGTGGTAAAAGTAAAAAGACAAGTAAAAAGGCTCGTAAAGCTACTGTGGAATGCACCCCTGCCCGGCCAACTAAGTGGAGAGGAAGATCTAAGGGTTCAGATACACATGCTGGAGGAATTGAATGGGTTCCTGATGCTGAACCTGCATCCACTGGCGGAAATAAGATAATCGAAATAGTGGATGCTTCAAACCAAAAGGCGATCATAGAGAATGCGAAAAAGAATACCCTCCAATTGGCTCAAGCAGCATGTCCCGCAGACGGATTCTATGTAGTCATGAGACCCTCGCATGTATTCCGGAGATTCTATGTGACAATCCCTATGAAGTGGATGGCAGAGCATTTTCCTCCACAATCTGAAGATGTGATATTACGTGTGGGAGAGATCGAATGGCTTGCTAAATACGTCTTTGAACCCAGCCGTCATACCGGCGGACTGACCGGCGGGTGGAAACAGTTTGTGGTGGACAATAACCTGCGAGAATTTGATGTTTGTGTGTTCAACCAAGCAAATTTAGGCAAGAAGCCACTGACCCTTGATGTGAAAATATTCAAAGTTGATGTGTAG 1056 0.4347 MAETCGSCRSWVDDVYWTHFKFTHFAQRLPPGFDQHLALPKRFSDSLKRKLPDNVTLKGPGGAELTVRLSTRDDILHFTNGWQQFAQDHFLEENDLLIFKYNGESQFDVLIFDKKNLCEKVASYFVRDSGQTNQRNTDNNCLEEENIPTTNIDVKGPSPKKSARGKSKKTSKKARKATVECTPARPTKWRGRSKGSDTHAGGIEWVPDAEPASTGGNKIIEIVDASNQKAIIENAKKNTLQLAQAACPADGFYVVMRPSHVFRRFYVTIPMKWMAEHFPPQSEDVILRVGEIEWLAKYVFEPSRHTGGLTGGWKQFVVDNNLREFDVCVFNQANLGKKPLTLDVKIFKVDV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0153 351 MobiDBLite consensus disorder prediction 130 208 - -
Alju09g0153 351 SUPERFAMILY DNA-binding pseudobarrel domain 252 340 IPR015300 -
Alju09g0153 351 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 350 IPR044837 -
Alju09g0153 351 SUPERFAMILY DNA-binding pseudobarrel domain 21 115 IPR015300 -
Alju09g0153 351 MobiDBLite consensus disorder prediction 130 156 - -
Alju09g0153 351 CDD B3_DNA 32 113 IPR003340 GO:0003677
Alju09g0153 351 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Alju09g0153 351 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Alju09g0153 351 Pfam B3 DNA binding domain 252 347 IPR003340 GO:0003677
Alju09g0153 351 Gene3D - 18 118 IPR015300 -
Alju09g0153 351 CDD B3_DNA 252 348 IPR003340 GO:0003677
Alju09g0153 351 SMART B3_2 252 350 IPR003340 GO:0003677
Alju09g0153 351 SMART B3_2 25 115 IPR003340 GO:0003677
Alju09g0153 351 Gene3D - 230 350 IPR015300 -
Alju09g0153 351 ProSiteProfiles B3 DNA-binding domain profile. 252 350 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0153 Alju-ChrAlju09 1673696 1677451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0153 1 348 REM Transcription Factor Family AT4G33280 35.789 1.90e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju09g0153 B3 1.8e-13 CL0405