Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0094 ATGAGGATGGAAATGAGGAAAGGAGAGATAAGGGATTTGGCTACTTGGTGGCCCCCAACCCCTAAACCCATCATCTTCACTTCTGCTATTCTCACAAACCACCAAAAAGAAAAAAGCCCAACATATACATACATACTTACTTCAGATTCGCTTGACTTTTCCCAAGAACACATCATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCACAGAAGAAAACCCAATTCTTCAGATGACACAACAACAACAACAACAACATCAATCCTCTACAGCTGCTTCCTCGACTTCTCCAAACACTCTTGTTCCTCAAAAGAAACGAAGGAATCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCTCTATCTCCAAAGACGTTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTTCAAAGAGAGCAGAACCTGCAACTTCACAGAAGAGGACACAACCTACCATGGAAGCTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTCCACCATGACCCTTCTAGAGCTCTCGGTGACCTCACCGGCATTAAGAAACACTACTCGAGAAAACACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCCAAGAAATACGCTGTTCAGTCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACCAGAGAATACAGATGTGACTGTGGCACTCTTTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCCCTAGCTCAAGAGAGTGCAAGAAACCCAACGAGCTTAAACCCTATGGCCACTCATAATCTTTATGGCACAAACCACCATATGAGCTTAGGTCTCTCTCATCATCATCAACAACTTTCTGGTTCCTCACTGTCATCTCACCAACTTCATTTTCATCATCAAAACCCTAATACCACCAGTCTCTTGCGTCTAGGAGGAGCTGGCAATGCCAACAACAACAACAATAATAATAATGCAGCAAAATTTGAGCCTACCAGCTTAATCTCACCCTCATCATCCTCAAACCCTAATTCAATGCCCAATCATTCCTCAGCTTTTTTCATGTCAGATCCCAATCCGATCCCTAACCAAGGATTTCAGCATCATCAGCAAGTATTTTCTTCTTCAGGCAACAAGGCAACGTCTTTGCATGGTCTCATGCAGCTTCCTGATCTTCAAGGAAACCCTAATGATAACGACGGTTCCTCCAACAATCCTTTCAATCTAGGGTTTTTCCCTAATAACACTATGATCACTCCTGATCAGTTCAATAACCCTATTGGGTCTGGTTTAGCTTCGTCAGTGCTGTTCAGCAACTCAATGCAGCACGCCGATGAGGTTTCTCCGGCGGCGGCAAATATGTCGGCAACTGCATTGCTTCAGAAGGCTGCTCAAATGGGCTCCACCACGACCACACCGCCGTCGAATAATAACAGTTCTTCCTCGTTACTCAGAAGAATGGGTGGTTCATCGGCCAATAATAATAATAATAATAATGGTGGTGGTGGTAAATCGGATAATCTTGTCACTTTCGGAAGCGACGGTGCGGAGAATGATCACCACCATCATCTTCGAGGGTTGATGAACTCTCTTGCTAATGGCAATGCTTCGATATTTGGGAATGAGCAGGGAAATAGTCTGCAACTACAGAATCTGGGAGTGGGATTCGGAGGTTCTGATAAGTTAACGTTAGACTTTTTAGGTGTCGGAGGAATGGTGAGGAACATTAATAATGGTGGCTTTTCATCGTCACAGAGAGAAGCTCAACAACAACATCAACATGGAAGCATCAACGTTATGAGTTCTTTGGAACCTCCGCCTGGACAGCATCAACAGCAGGCAAGCCAACGTTTCAGAAGTACGACGTCGTTGCAATGA 1917 0.446 MRMEMRKGEIRDLATWWPPTPKPIIFTSAILTNHQKEKSPTYTYILTSDSLDFSQEHIMSAASSSSPFFGITEENPILQMTQQQQQQHQSSTAASSTSPNTLVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPTSLNPMATHNLYGTNHHMSLGLSHHHQQLSGSSLSSHQLHFHHQNPNTTSLLRLGGAGNANNNNNNNNAAKFEPTSLISPSSSSNPNSMPNHSSAFFMSDPNPIPNQGFQHHQQVFSSSGNKATSLHGLMQLPDLQGNPNDNDGSSNNPFNLGFFPNNTMITPDQFNNPIGSGLASSVLFSNSMQHADEVSPAAANMSATALLQKAAQMGSTTTTPPSNNNSSSSLLRRMGGSSANNNNNNNGGGGKSDNLVTFGSDGAENDHHHHLRGLMNSLANGNASIFGNEQGNSLQLQNLGVGFGGSDKLTLDFLGVGGMVRNINNGGFSSSQREAQQQHQHGSINVMSSLEPPPGQHQQQASQRFRSTTSLQ 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0094 638 MobiDBLite consensus disorder prediction 80 120 - -
Alju09g0094 638 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 81 601 IPR031140 -
Alju09g0094 638 MobiDBLite consensus disorder prediction 80 112 - -
Alju09g0094 638 MobiDBLite consensus disorder prediction 309 395 - -
Alju09g0094 638 SMART c2h2final6 211 231 IPR013087 -
Alju09g0094 638 SMART c2h2final6 176 206 IPR013087 -
Alju09g0094 638 SMART c2h2final6 135 157 IPR013087 -
Alju09g0094 638 SUPERFAMILY beta-beta-alpha zinc fingers 134 231 IPR036236 -
Alju09g0094 638 FunFam protein indeterminate-domain 12-like 114 182 - -
Alju09g0094 638 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 157 IPR013087 -
Alju09g0094 638 Pfam Zinc-finger double-stranded RNA-binding 135 157 IPR022755 -
Alju09g0094 638 FunFam protein indeterminate-domain 5, chloroplastic-like 189 268 - -
Alju09g0094 638 MobiDBLite consensus disorder prediction 591 638 - -
Alju09g0094 638 Gene3D Classic Zinc Finger 114 183 - -
Alju09g0094 638 MobiDBLite consensus disorder prediction 475 519 - -
Alju09g0094 638 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Alju09g0094 638 Gene3D Classic Zinc Finger 189 268 - -
Alju09g0094 638 MobiDBLite consensus disorder prediction 475 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0094 Alju-ChrAlju09 1041546 1046989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0094 130 590 C2H2 Transcription Factor Family AT2G02080 50.743 4.34e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju09g0094 zf-C2H2_jaz 4e-05 CL0361