Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0058 ATGCCATCTGATATGGCGGCATCTTCGTCGTCGGCGTCGCTGTTCGGAATCAGAGGAGATCAGAATCCGATGAATCAGCAGCAGCATTCATCAACTACTCCAACTTCATCAACAAACGCAGCTGCACCACCCCAGAAGAAGAAGAGAAACCAACCAGGAACACCAAATCCAGATGCAGAGGTGATAGCTTTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTTCAAAGGGAGCAGAACCTACAACTTCACAGAAGAGGACACAACCTACCATGGAAGCTAAAGCAGAAGACAAACAAAGAACCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTCCACCATGACCCTTCTAGAGCTCTGGGTGACCTCACCGGCATTAAGAAACACTACTCAAGAAAACACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACCAGAGAATACAGGTGCGACTGTGGCACTCTCTTCTCCAGGCGAGACAGTTTTATCACCCACAGGGCGTTTTGTGATGCACTGGCTCAAGAAAGTGCGAGACAACCTTCCAACTTGATTAATGGGGGCCAGCTCTATGGAAGTGACAACATGGCTTTAGGCTTATCTCAGGTCGCCTCCCACCTCTCCGCCGCCGTCCATGACCACCACCCCAACAACCAACCCGGCACCGACATTTTGCGGGCCGCTGTGGCCGCTCGGGCAGGCCATTTTGACCACCTTCTGCCACCATCTTTTATTAGACCACCACCACCACCACCACAGCAAATGGCGGCCAATGTTGCTTCTCCTCCCGCCTTCTTCATGGCGGAGCAATCGAACCAGAACTATCACCACCAGCAAAACAAGCACCAATTCCATGGACTCATGCAATTCTCTGATCTTCATCATCACAACAATAGTAACAATTCTCCAACATCTGCACCTAATAATAGTGCCACCCTCTTCAACCTTCCTCCATTCCTCTCCAGCACCACCAACAACAACAGTTCTTTATCCGAAGCCGCTGGAGGAGGAGGACACATGGACGGCAGCCCCAACAACAACTTCTTCAGCGACCAGATCACAAGCTCAAGTGCTCCTTCTCTTTTCAGCACATCTCTACAGAACAACAGCAACAGCAGCAGTATCCCTCACATGTCTGCAACAGCACTGCTTCAAAAGGCAGCTCAAATCGGTGCGAGTTCCAGCAACAACAGCACCACAGTCTCACTTCTCAGAAGCTTCGGGAGCTCCTCTTCCACCACCACCGGATCCAAGTCTGATCACCACCACAACAACAACAGGCCGCTTCCACCACAGCAGCTGATCGGAACAAACTATGGCCCTCTTTTTGGAGGGCCGTCGTTGTCGTCGACAACCAACAACGACGATCAGAACCGTAACCTTCAAGACTTGATGAACACATTCACTTCTGTTGGTGGGTATGAAGGATACGATCATCATCAGCATCAACAAAACAACTCATCAAACACAAGAGATCTGAAACTACCCGTAGGATCTGACAGGCTAACTCGAGATTTTCTTGGTGTTGGGCAAATTGTGAGAAGCATGAGTGGAGGAATATCACCCAGAGATCATCATCATCATCAACAAGGGTTCATGGACTTGGGTTCTACTATGGAGACTCGTCATCACAGAAATGGTAATAATAATAATAATGCTGCGCCGTCAGGCCAATCTTTCGGAGGTGGTGGAGGGAGTTTTCATACCAAGGGATGGATCGATGTCATGAAGATGCTCCGTTATAATTCAGTTTACCAGAAGCAGATCAGATCAGATATATACTTGCAACTTGTTCTGTCCTCTCACTCACCACCTCGTGGACTGCGATGA 1917 0.4867 MPSDMAASSSSASLFGIRGDQNPMNQQQHSSTTPTSSTNAAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSNLINGGQLYGSDNMALGLSQVASHLSAAVHDHHPNNQPGTDILRAAVAARAGHFDHLLPPSFIRPPPPPPQQMAANVASPPAFFMAEQSNQNYHHQQNKHQFHGLMQFSDLHHHNNSNNSPTSAPNNSATLFNLPPFLSSTTNNNSSLSEAAGGGGHMDGSPNNNFFSDQITSSSAPSLFSTSLQNNSNSSSIPHMSATALLQKAAQIGASSSNNSTTVSLLRSFGSSSSTTTGSKSDHHHNNNRPLPPQQLIGTNYGPLFGGPSLSSTTNNDDQNRNLQDLMNTFTSVGGYEGYDHHQHQQNNSSNTRDLKLPVGSDRLTRDFLGVGQIVRSMSGGISPRDHHHHQQGFMDLGSTMETRHHRNGNNNNNAAPSGQSFGGGGGSFHTKGWIDVMKMLRYNSVYQKQIRSDIYLQLVLSSHSPPRGLR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0058 638 Gene3D Classic Zinc Finger 129 208 - -
Alju09g0058 638 Gene3D Classic Zinc Finger 54 123 - -
Alju09g0058 638 MobiDBLite consensus disorder prediction 1 52 - -
Alju09g0058 638 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Alju09g0058 638 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 560 IPR031140 -
Alju09g0058 638 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Alju09g0058 638 MobiDBLite consensus disorder prediction 472 489 - -
Alju09g0058 638 MobiDBLite consensus disorder prediction 501 525 - -
Alju09g0058 638 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Alju09g0058 638 MobiDBLite consensus disorder prediction 422 489 - -
Alju09g0058 638 SMART c2h2final6 116 146 IPR013087 -
Alju09g0058 638 SMART c2h2final6 75 97 IPR013087 -
Alju09g0058 638 SMART c2h2final6 151 171 IPR013087 -
Alju09g0058 638 MobiDBLite consensus disorder prediction 321 362 - -
Alju09g0058 638 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Alju09g0058 638 MobiDBLite consensus disorder prediction 508 523 - -
Alju09g0058 638 FunFam protein indeterminate-domain 12-like 54 122 - -
Alju09g0058 638 MobiDBLite consensus disorder prediction 422 448 - -
Alju09g0058 638 MobiDBLite consensus disorder prediction 571 591 - -
Alju09g0058 638 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Alju09g0058 638 MobiDBLite consensus disorder prediction 321 381 - -
Alju09g0058 638 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0058 Alju-ChrAlju09 746384 751428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0058 45 547 IDZ Gene Family AT2G02070 48.399 6.73e-133 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju09g0058 zf-C2H2_jaz 4e-05 CL0361