Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0056 ATGGAGGATTCATGGGAGACTGGTTTTACTCAGTATCCAGAAATGGATGATGCTCAAGAATTCCAAGATTGCCACACGATGATGAATTTGGGCGAGGAAGAGGAAGAGTTTCTGAGGAACATTGTGCAGAGGCCAGATGGTCAATATTCTTCAACCGATTTGGATCCTGTCTGGTCGGAGATTATGCCATCTTGTCATCAAAGAGATGAAACTGAAAATAACGGAACTACTAATTCCAGCGATAACGTGGTATCTCCTAGGGCTTACGTCCTTTCATTTGATAGCTCCGCCGTAAATCCAATCATAAAGAAACAGGAAGAAGAATATGATACATTGAAACGGAGTTCGCCGATTAAAAGGAGCAGAGCGGCGGGGCAAAACGTTGAAGGGAGAAAGAATAAAAGGCGGTGTTCGGAGGAAGTGGAGGATCATATAATGGCGGAGAGGAGAAGGAGACAAAGGATTACAGAAAAGTTCATTGCACTTTCTGCAACTATTCCCGGCTTGAAGAAGTTGGACAAGGTGACTATACTGGATGAAGCTATCAAGTACGTGAAACAACTCCAGGACCGTGTAAGAGTACTAGAGAAAGATACGTCATTGGCATCCATAAAGAGAATTGAGTTTTATGAGAATGACAACAACTTTTATGAAGTGAATGAAGCACTGCCTAAGATTGAAGTTAGAGTTTCGGAGAAGCAAATGTTTATGGGAATCTATTGTGAGAAACAGAAGGGAACTGAGTTCAAAATATTGAGCTTGCTTGAGAACTTTCATCTGTGTGTCACCAGTAGTAGCGTCTTGCCATTTGGAAAATCCACTCTTGGCATTACCATTATTGCTCAGGTGGGTGATGAGTACAATACGCCAGTGAATGAAGTGGTGAAAAACCTACGACAAATTCTGTTATTGCCATCATGA 921 0.4191 MEDSWETGFTQYPEMDDAQEFQDCHTMMNLGEEEEEFLRNIVQRPDGQYSSTDLDPVWSEIMPSCHQRDETENNGTTNSSDNVVSPRAYVLSFDSSAVNPIIKKQEEEYDTLKRSSPIKRSRAAGQNVEGRKNKRRCSEEVEDHIMAERRRRQRITEKFIALSATIPGLKKLDKVTILDEAIKYVKQLQDRVRVLEKDTSLASIKRIEFYENDNNFYEVNEALPKIEVRVSEKQMFMGIYCEKQKGTEFKILSLLENFHLCVTSSSVLPFGKSTLGITIIAQVGDEYNTPVNEVVKNLRQILLLPS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0056 306 Pfam Helix-loop-helix DNA-binding domain 144 189 IPR011598 GO:0046983
Alju09g0056 306 PANTHER BHLH TRANSCRIPTION FACTOR 33 302 - -
Alju09g0056 306 Gene3D - 127 203 IPR036638 GO:0046983
Alju09g0056 306 MobiDBLite consensus disorder prediction 112 135 - -
Alju09g0056 306 Coils Coil 178 198 - -
Alju09g0056 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 202 IPR036638 GO:0046983
Alju09g0056 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Alju09g0056 306 SMART finulus 145 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0056 Alju-ChrAlju09 689375 691237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0056 135 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 41.026 9.55e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g0056 HLH 8.2e-12 No_clan