Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0054 ATGGAGGAGCCATGGCAGACTAGTTTTCCTCCACCTCTTGATATGAAAGGCGCTGAAGTAGATTTCCACGAGCAGTACAATGGAATGATGTGTTTGGATGAGGAGGAGGAAGAGTTTCTGAGAAGCATTATGCAGCAACCAGCTGGTCGTCATTATCAGTCTTCTCAAACAGAAACTGAGAATAACGAGAGTTTCAGCAAGCTTGGTTCCAAGGATGAAAACCACGTTGTCGTGGTGTCACCTAAGGCATACGTTCTGTCATTTGATACCCATGCCATGGAACCAATAATCTCAAAACAACAAGAGTCTAAGAAACAATGTTCGTCGAAAAGAATCAGAGCGAGCCTTGACGCTGAATCGAGTAAGCGGAAAAGAAGGTCTTCGGACGAGAAAGTAGTGGATCATATAATGGCAGAGAGGAAACGGAGACAACAAATTGCAGAAAGGTTCATTGCACTTTCTGCAATTATTCCGGGCTTGAAGAAGGTGGACAAAGCCACTGTACTGGACGAAGCTATTAAGTACGTGAAACAACTTCAAGAGCGTGTAAGAGAACTAGAGAAAGAGACATCAATGTTATCCAAAAGGAAAACTGTGCTTTGTGAGAAGAATGGCGTTTTCTGGGAAGTAATTGATGAACTTCCTAAGATTGAAGTAAGAGTTTCAGAGAAGCAAGTGCTTCTGGGAATCCATTGCAAGAAACAAAAGGGCATCGAGTTCAAAATACTGAATTTGCTTGAGAATATTCATCTTTGTGTCTCCAGTAGCAGCGTCTTGCCATTTGGGAATTCCACTCTTGACATTAACATTATTGCTCAGATGGCTGATGAATATAGGATGCCAATGAATGAAGTAATGAAAAACATTAAACAAATTCTACTAAAGTCGCATGATCACGAGGTTGATCCGTACTAG 915 0.4153 MEEPWQTSFPPPLDMKGAEVDFHEQYNGMMCLDEEEEEFLRSIMQQPAGRHYQSSQTETENNESFSKLGSKDENHVVVVSPKAYVLSFDTHAMEPIISKQQESKKQCSSKRIRASLDAESSKRKRRSSDEKVVDHIMAERKRRQQIAERFIALSAIIPGLKKVDKATVLDEAIKYVKQLQERVRELEKETSMLSKRKTVLCEKNGVFWEVIDELPKIEVRVSEKQVLLGIHCKKQKGIEFKILNLLENIHLCVSSSSVLPFGNSTLDINIIAQMADEYRMPMNEVMKNIKQILLKSHDHEVDPY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0054 304 Coils Coil 169 196 - -
Alju09g0054 304 PANTHER BHLH TRANSCRIPTION FACTOR 45 295 - -
Alju09g0054 304 Pfam Helix-loop-helix DNA-binding domain 134 180 IPR011598 GO:0046983
Alju09g0054 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Alju09g0054 304 MobiDBLite consensus disorder prediction 46 68 - -
Alju09g0054 304 MobiDBLite consensus disorder prediction 104 132 - -
Alju09g0054 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 197 IPR036638 GO:0046983
Alju09g0054 304 SMART finulus 136 185 IPR011598 GO:0046983
Alju09g0054 304 MobiDBLite consensus disorder prediction 97 132 - -
Alju09g0054 304 Gene3D - 120 200 IPR036638 GO:0046983
Alju09g0054 304 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0054 Alju-ChrAlju09 646512 649442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0054 134 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 43.850 1.69e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g0054 HLH 5.2e-11 No_clan