Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0049 ATGGCATCGGCCTTTATCAAGCTGGACGATTCCCCCATGTTTCAGAAGCAGATATGTTCTCTTGAAGAAACGACTAATGAATTAGCAGATCGCTGCCAGAAACTATACCAAGGGTGCAAGAAATTTATGGCAGCTTTAGGAGAAGCTTATAATGGAGACATTGCCTTCGCTGACGCTTTAGAATTATTTGGTGGTGGGCGGGATGATCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAAATTTATTAGTGCACTTCATGAGCTTGCATCTTTTAAAGAGCTTCTCCGGTCACAGGTGGAGCATGTGTTGATCGATCGGTTGGTGCAGTTTATGAATGTTGATTTACAAGATGCAAAGGATTCTCACACTCGTTTTGACAAAGCTGCACATTCATATGATCAGGCACGAGAAAAATTTGTGTCTTTGAAGAAGAATACACGTGAAGACATTGTTGCTGGGTTAGAAGAGGGTCTTCAAAATTCAAAGTCAGCATTCGAGAAAAGTCGTTTTAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAATTCTTGGAATCCTTTAGTGCAATAATGGATGCTCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCTTATATTCACCAGGTATTGACATATGCACAACAATCTAAAGAGCTGGCCAATGCTGAACAAGATAAGCTTGCACAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACTTACGAGCTTCTAGTAATGCTGATGCTTTATCTGGTGTTGACGGCAGCCGCGTTGTTGGTTTGAACTCATATAAGAGCTTTGAAGTAGGGATTCAGTCTGTGCCCCAAGGAGAGTGTCAAACAATTAAGCAAGGCTATCTGCTAAAACGATCGTCAAGATTGCGAGGAGATTGGAAGCGGAGGTTCTTTGTGCTTGACAACCAAGGGAGTTTATATTACTATAGAGGGAAGGGAGCCAAGGCAATGGGCTCTCAATCATATAATTTTATTAGATCAGCTGAACAAAACAGTGGCATGTTTGGTAGATTCCGCTCTAGGCACAACAGAGCAGCATCACTTAATGAGGAAATTCTGAGTTGCCGTGCGGTTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTACGACTTTGCTTTCGTATAATCTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATTACATCGCTTTTCAACTCTCAGTTTCTTCAACAGCCTAATCGGGTTGGATTGCATCAAGAAAATGATAAATCAGCCATTGGTGCTTCATGCTATAGTCAATCTAGCCATGGATCTTTGACTGAAGACGTATATTCCAATGAAGTGGAGAGTGTCTCTAAGATTTTATGGGGAATTCCTGGAAATAATAGGTGTGCTGAGTGTAGTGCAACTGAACCAGACTGGGCATCTCTTAACCTTGGGATATTGCTGTGTATTGAATGCTCTGGCGTTCATCGAAATCTTGGAGTTCACATTTCAAAGGTGAGATCTATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTCTGGACTTATTCCGGAACTTGGGTAATGCATATTGTAATTCTATATGGGAGGGATTGCTACATGACAATGAAAGGAAAAATGAGTCAAATGCCTTTCCAATTAAACCATGCCCTACAGATGCCTTTCAAGAGAAGGAAAAATACATCCATGCGAAGTACATAGAGAAGTCACTAATCAATAAAGAGACTGTACCCGGGAACCCTTCTCTTGCCTTGAGAATATGGCAAGCGGTTCAGGCTTTGAACGTACAGGAAGTGTATCGCCTCATTGTCACTTCAGATGCAACTCTGGTAAACACCAAATATGATGATGCGGCTTACCATGCTGAGGCAGAAAATTTGGATTTAAGATGTAGCACAACTGAAAGCCAGCAAGATCCTGATAATCCTGTGAGCTGTGTCCAAGGTTGTTCACTTTTGCATCTGGCATGTCATTCTGGCAGTGAACTAATGGTTGAGTTGTTGCTTCAATTTGGTGCGGATATAAATGTGCGTGACTCCCATGGAAAGACTCCCTTGCACCATTGCATTTCTAGAGGAAAAAATCCTTTGGCAAAGCTTCTGCTTCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGATTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTGGCTGAATCCGCTTGA 2313 0.4159 MASAFIKLDDSPMFQKQICSLEETTNELADRCQKLYQGCKKFMAALGEAYNGDIAFADALELFGGGRDDPVSVSIGGPVISKFISALHELASFKELLRSQVEHVLIDRLVQFMNVDLQDAKDSHTRFDKAAHSYDQAREKFVSLKKNTREDIVAGLEEGLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANAEQDKLAQRIQEYRTQAELDNLRASSNADALSGVDGSRVVGLNSYKSFEVGIQSVPQGECQTIKQGYLLKRSSRLRGDWKRRFFVLDNQGSLYYYRGKGAKAMGSQSYNFIRSAEQNSGMFGRFRSRHNRAASLNEEILSCRAVDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPNRVGLHQENDKSAIGASCYSQSSHGSLTEDVYSNEVESVSKILWGIPGNNRCAECSATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSIWEGLLHDNERKNESNAFPIKPCPTDAFQEKEKYIHAKYIEKSLINKETVPGNPSLALRIWQAVQALNVQEVYRLIVTSDATLVNTKYDDAAYHAEAENLDLRCSTTESQQDPDNPVSCVQGCSLLHLACHSGSELMVELLLQFGADINVRDSHGKTPLHHCISRGKNPLAKLLLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0049 770 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Alju09g0049 770 Gene3D - 646 769 IPR036770 -
Alju09g0049 770 SUPERFAMILY Ankyrin repeat 648 757 IPR036770 -
Alju09g0049 770 SMART PH_update 295 430 IPR001849 -
Alju09g0049 770 Pfam PH domain 296 427 IPR001849 -
Alju09g0049 770 CDD ArfGap 480 595 - -
Alju09g0049 770 Gene3D - 295 432 IPR011993 -
Alju09g0049 770 Coils Coil 229 249 - -
Alju09g0049 770 CDD PH_ACAP 297 432 - -
Alju09g0049 770 SUPERFAMILY PH domain-like 288 440 - -
Alju09g0049 770 Pfam BAR domain of APPL family 8 235 IPR004148 GO:0005515|GO:0005737
Alju09g0049 770 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Alju09g0049 770 ProSiteProfiles Ankyrin repeat region circular profile. 677 708 - -
Alju09g0049 770 SMART arf_gap_3 476 608 IPR001164 GO:0005096
Alju09g0049 770 Gene3D Arf GTPase activating protein 458 606 IPR038508 -
Alju09g0049 770 ProSiteProfiles ARF GTPase-activating proteins domain profile. 476 608 IPR001164 GO:0005096
Alju09g0049 770 PANTHER CENTAURIN/ARF 4 768 IPR045258 GO:0005096
Alju09g0049 770 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Alju09g0049 770 ProSiteProfiles Ankyrin repeat region circular profile. 710 741 - -
Alju09g0049 770 SMART ANK_2a 677 706 IPR002110 GO:0005515
Alju09g0049 770 SMART ANK_2a 710 739 IPR002110 GO:0005515
Alju09g0049 770 Pfam Ankyrin repeats (3 copies) 682 753 IPR002110 GO:0005515
Alju09g0049 770 CDD BAR_SFC_plant 16 217 IPR035670 -
Alju09g0049 770 ProSiteProfiles Ankyrin repeat profile. 710 742 IPR002110 GO:0005515
Alju09g0049 770 SUPERFAMILY ArfGap/RecO-like zinc finger 476 601 IPR037278 -
Alju09g0049 770 Pfam Putative GTPase activating protein for Arf 479 603 IPR001164 GO:0005096
Alju09g0049 770 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Alju09g0049 770 PRINTS HIV Rev interacting protein signature 488 507 IPR001164 GO:0005096
Alju09g0049 770 PRINTS HIV Rev interacting protein signature 530 551 IPR001164 GO:0005096
Alju09g0049 770 PRINTS HIV Rev interacting protein signature 507 524 IPR001164 GO:0005096
Alju09g0049 770 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0049 Alju-ChrAlju09 574423 594725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0049 486 595 C2H2 Transcription Factor Family AT4G05330 42.342 1.98e-20 91.7