Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0018 ATGGGCAAATCCAGCAAGAAATCAGCTCCCAAAGTTGATTCTGCTCCGGCTGTTGTTCCGCCTTCGAAGTCTGCAAAGAAAGGCAAGAGGGAAGCCGAGGATGAACTTGAGAAGCTAGTGAGTGCAAAGAAGCAGAAGAGAGATGAAGTTGCTGATAAGAAGAGGGCCAAGGTGCAGAAAAACGAAAAAGAAAGCAGTTCAGATGATGATTCTTCATCAGAATCCGAGGAAGACAAGAAAACTGTCACAAAAGCTGTTCTTCCATCAAAGACACAACCTTCTAAGAATGGCACTTTAAGTGGCCGGGTGAACAAAGGCAAGCCAGCTAGTAGCTCCACTTCTGAATCCTCTGATGATGACTCCGATAGTGGTGATGCTGGAAAATCCAAGGTTGCCTCTGCTGCTGGTAAGAATGGAACTCTTTCAACAAAGAAGAAAGTTGAGTCAAGTCACAGCTCAGATACTGAGAGCAGTTCAGATGAAGAAAATGTTGTGAGAACTAAAGTTGCCCCGCTATCCAAGAAGACACCTGTTGCTGCAGCTAAGAAAGTTGAATCAGATTCAGAACCTGACAGCAGCTCTGATGAGGATGATGTCCCTACAAAATCATCCAAGAAGTTGCCTGCTGCTCCTGCCGCAGGTAAAAGTAAACCTGCCAAAAAAATTGAGTCTAGTGATGACGCAACCTCTGATAGCAGCTCAGATGATGATAATCTTGCGACAAAGAAGTTGCCTGCAACAACAGTTCCTTCAAAGAAGAAAGTTGAGAGCAGTGAAAGCTCTGAAGATGAATCAAGTGAAAGCTCTGATGAAGATAATGGTATGAAGTCTTCTGTCAAAGCAGTTTCCAAGCCTTCCATTGTTTCAAAGAAAGTTGAATCAAGTGAGAGATCAGAATCTGATAGCAGTAGCTCTGACGAAGACAACGAAAATAAAAAGGGAGTCCACAATGCTTCCAGTATCAAGCCAGCAAAGGCTTCTGATAAGAATTCCAAGTTAAAGGATAGATCTGACGAGACTGATGATGATGATGAGGAATCCTCTGACAGTGATTCTGAGGATGAGAAGAAAACTGCTCCTAAGGCTAATGCTAAAGCTGCAACTGCTGTGAAGACAGTAAAAAAGGAGTCTAGTGAAAGTGCATCTGAAGATGACTCTTCGGAAGATGAGGATAAGATGGATGTTGATGAAGGCAGTAGTTCTGAAGAAAGTGAGGAGGAGCCACAAAAGAAGAAGCCTGTGAAAGCTATTAAGGAAAGCAGTGAAAGTTCAGAGAGCTCAGATGATAGCGAGGATGACAATGAGACACCCTCCAAGACTCAGAAAAATGCTAAGGATGTGGAGATGGTTGATGCTGCATCAGCAAAGTCAAATGGAAAGAGACCTCCTAGCACCCCGGCTACTCCAAGAGCACAAAATGCCACATCAAAGACTCTGTTTGTTGGAAATTTGTCATATAAAGCAGGACAGACCGATGTGGAAAACTTCTTTAAAGATTGTGAAGTGGTTGTGGTCCGTTTAGCCTCAGATGAAAATGGCAGATCTAAAGGTTTTGGGCATGTTGATTTTGCCACAGAGGAAGCAGCACAAAAAGCCCTTCAGTTGAATGGGGAAGAATTGCTTCAGCGTCCCGTGAAACTTGATTTAGCTCGTGAAAAGGGAGCATATACCCCCAATAGCAGCAACTGGAGCAATTCATTCCAGAAAGGAGGACAGGCTCAAGCTCATACATTATTTGTTAAGGGTTTTGATACATCCCTGGGGGAAGATGAGGTGAGAACGAACCTGACAGAGCATTTCAGCTGTGGAGAGATTACAAGGATATCAATTCCTAAAGATTACGAGACTGGTGCTGTCAAGGGGTTTGCCTACATGGATTTCAAGGATGGTAATGCCCTTAACAAAGCACTGGAATTGAATGGAAGTGAGCTTGGAGATGGATATTATTTGACTGTTGATGAGGCAAGACCTCGAGCTGATAATCAAGGTTCCAGTGGTGGTAGAGGTGGTGGAAGGAGTGGTGGTGGTCAATTTGGGGCTAGGGGTGGCAGTCAATTTGGGGGCAGGGGTGGCAGAGGTGGTGGTGGTCAATTTGGGGGAAGAGGTGGTCGTGGAAGAGGTGGCGGCGGCGGCAGGGGGCGTGGCACACCCTATAAACCGAGTCTTGCTGCTGCAGGCACAGGGAAGAAGACCACATTTGCAGATTAA 2208 0.4511 MGKSSKKSAPKVDSAPAVVPPSKSAKKGKREAEDELEKLVSAKKQKRDEVADKKRAKVQKNEKESSSDDDSSSESEEDKKTVTKAVLPSKTQPSKNGTLSGRVNKGKPASSSTSESSDDDSDSGDAGKSKVASAAGKNGTLSTKKKVESSHSSDTESSSDEENVVRTKVAPLSKKTPVAAAKKVESDSEPDSSSDEDDVPTKSSKKLPAAPAAGKSKPAKKIESSDDATSDSSSDDDNLATKKLPATTVPSKKKVESSESSEDESSESSDEDNGMKSSVKAVSKPSIVSKKVESSERSESDSSSSDEDNENKKGVHNASSIKPAKASDKNSKLKDRSDETDDDDEESSDSDSEDEKKTAPKANAKAATAVKTVKKESSESASEDDSSEDEDKMDVDEGSSSEESEEEPQKKKPVKAIKESSESSESSDDSEDDNETPSKTQKNAKDVEMVDAASAKSNGKRPPSTPATPRAQNATSKTLFVGNLSYKAGQTDVENFFKDCEVVVVRLASDENGRSKGFGHVDFATEEAAQKALQLNGEELLQRPVKLDLAREKGAYTPNSSNWSNSFQKGGQAQAHTLFVKGFDTSLGEDEVRTNLTEHFSCGEITRISIPKDYETGAVKGFAYMDFKDGNALNKALELNGSELGDGYYLTVDEARPRADNQGSSGGRGGGRSGGGQFGARGGSQFGGRGGRGGGGQFGGRGGRGRGGGGGRGRGTPYKPSLAAAGTGKKTTFAD 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0018 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 477 552 IPR000504 GO:0003723
Alju09g0018 735 SUPERFAMILY RNA-binding domain, RBD 466 565 IPR035979 GO:0003676
Alju09g0018 735 CDD RRM2_NUCLs 577 655 IPR034350 -
Alju09g0018 735 MobiDBLite consensus disorder prediction 24 84 - -
Alju09g0018 735 MobiDBLite consensus disorder prediction 180 203 - -
Alju09g0018 735 SUPERFAMILY RNA-binding domain, RBD 565 684 IPR035979 GO:0003676
Alju09g0018 735 Gene3D - 452 560 IPR012677 -
Alju09g0018 735 MobiDBLite consensus disorder prediction 85 117 - -
Alju09g0018 735 MobiDBLite consensus disorder prediction 1 474 - -
Alju09g0018 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 578 646 IPR000504 GO:0003723
Alju09g0018 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 479 545 IPR000504 GO:0003723
Alju09g0018 735 SMART rrm1_1 478 548 IPR000504 GO:0003723
Alju09g0018 735 SMART rrm1_1 577 653 IPR000504 GO:0003723
Alju09g0018 735 Coils Coil 22 56 - -
Alju09g0018 735 MobiDBLite consensus disorder prediction 290 315 - -
Alju09g0018 735 Gene3D - 561 674 IPR012677 -
Alju09g0018 735 MobiDBLite consensus disorder prediction 458 474 - -
Alju09g0018 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 576 657 IPR000504 GO:0003723
Alju09g0018 735 MobiDBLite consensus disorder prediction 382 403 - -
Alju09g0018 735 MobiDBLite consensus disorder prediction 657 735 - -
Alju09g0018 735 MobiDBLite consensus disorder prediction 147 163 - -
Alju09g0018 735 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 577 706 - -
Alju09g0018 735 MobiDBLite consensus disorder prediction 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0018 Alju-ChrAlju09 223102 231159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0018 469 646 Eukaryotic Initiation Factors Gene Family AT4G34110 28.962 3.89e-09 58.2