Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g0014 ATGGGTCGAGGGAAGATAGAGATAAAGAGGATTGAGAACACGACCACCAGACAGGTGACGTTCTCAAAGCGCAGAGCTGGACTTGTGAAGAAGACTCATGAGCTTTCTGTGCTCTGTGATGCCCAAATTGGCCTCATCATCTTTTCTAGCACCGGCAAGATGTTTCAGTACTGCACCGAACCTTTCAGGATGGAGCAGATCATTGAAAGATACCAGAAAGCTACAGGAGTAAGCATACCTGAACATGATAGTCGGGAAGATATACTGGGTGAAATGGCAATGCTGAGGCAGGAGAGTCTGCGGCTTGAAATGGGAATTGGAAGGTATAAAGGAGAGAGCATGGGCAGTTTACAGTACGAGGAACTGAGTAAACTTGAACAAGACCTTGAGATATCTGTCGCCAAGGTCCGAAATCGCAAGAATGATGTGTTGCAACAGCAGCTGGATAATCTGCGAAGAAAGGAACGAATGATGGAAGAAGAGAACAGCTATCTGTCGCATTTGATTGAGGAGCAGGAGCGAGGAGGAGGAGTGGTGGTGGAGAACCAGATGGTGGAGCAACTAGCGTTGTATGAGGAAGGCCAAACTTGTCTTCAACTTGCTCCTCTCCACCTTCATCCCTATCTCCAGCTTGCCCAACCCCACATTCACCCTCCTTCTTCTCACCCCCTTTAA 675 0.48 MGRGKIEIKRIENTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKMFQYCTEPFRMEQIIERYQKATGVSIPEHDSREDILGEMAMLRQESLRLEMGIGRYKGESMGSLQYEELSKLEQDLEISVAKVRNRKNDVLQQQLDNLRRKERMMEEENSYLSHLIEEQERGGGVVVENQMVEQLALYEEGQTCLQLAPLHLHPYLQLAQPHIHPPSSHPL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g0014 224 Coils Coil 119 161 - -
Alju09g0014 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju09g0014 224 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Alju09g0014 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju09g0014 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju09g0014 224 Pfam K-box region 81 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju09g0014 224 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Alju09g0014 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju09g0014 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju09g0014 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju09g0014 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Alju09g0014 224 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju09g0014 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju09g0014 224 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g0014 Alju-ChrAlju09 186632 188883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g0014 1 216 MADS-box Gene Family AT5G23260 46.091 3.08e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju09g0014 K-box 5.8e-19 No_clan