Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2856 ATGTCTGTGAATCGGAAGCTCACTGGGTTAAATGGCAGGATGCCGCCGAATTCCAGGTCAGGTAAGTCAAATGAAGCTTCGAATGAGTCTAATTCTTCACTCAGGAAATGCAAGAAGAAGAAGCCCTTTTTCGTGTGGGGTTTTCTTGGTGTTGTTGCGCTGGGAATTGTGTGGTTCTTCATCAGTTCTCACTGTGACTCGTTCATGTTGAGGAAGGAGAAAAGGTTGGGTGATTGTGAAGAGAGAGCTCGAATCTTGCTCCAACGTCACAATATCAGCAAAAAGCAACTTCATGCTTTCGTTTCCTTCTTCTCTGTATCAGATCAGATTTTATCCCAATGTATCGATGAAAGAAGAGTGCAAAAGCTGTTAAGCAGAGACCTTGACAATAACCTGCAGATGATATTTTCAGAGAATAGGGAGTTCCATAAGGAGCATACATGTGTCACAGGCCAAGTCGAACTTATGGAACAATGTCCAGTTCTCAATGATTCTGTTCAGAGAAACTTGGAATCATTACTTCTAATGGAAAAAACTGTATCAATGGCCTCATACTCTGCTATCATGTCCAATTTTGTCAATAATTTGTTGCATGGAAAGAACATTGTGCAGTCATGGGTATTGGAGTTAGTTGCAATTCAGGGTTATCTGACTTTGTGTATAGGATGCTGGTGGATTCTCGTTGTAATTACAATTTGTTGTAGATTGGCTGGCTTTCCTTTATTTTGGAATCAGAAGCTGGTTTCACAGCCAAAACAGTCGCAACATTCTGCTGGGCAAAATCCAAAGGGTGCTGGGAGTTGGAGGAAAAAGCTTTTAGTTACATTTGTGTTACTTGGAATGGTTGTGTCCGTTTGGTTATTCTGGCACCTGAATAATGATATTATGCGGCGGAGGGAAGAAATGCTTACCAATATGTGTGATGAGCGAGCTCACATGCTGCAGGATCAGTTCAATGTGAGCATGAACCACGTTCATTCTCTGGCTATTCTTGTGTCCACCTTTCACCACAGTAAACATCCATCTACTATTGACCAGAAAACTTTTGGAGAATATACAGAGAGAACATCATTTGAAAGACCACTCACTAGTGGTGTTGCTTATGCTCTGAAAGTTCTCCATTCTGACAGGGAGCATTTTGAAAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAAACACTTGTCCAAGATTGTATTCCGGAAAATCTCAATCCTGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAGGAAACTGTTTCCCATATTGTATCTATTGATATGATGTCTGGAAAGGAAGACCGTGAGAATATCTTGCGAGCAAGAGCAACTGGAAAGGGAGTGCTAACATCTCCTTTCAAACTGCTGAAGTCCAATCACCTGGGTGTTGTCCTTACATTTGCTGTCTACAATGATAATTTTCCTCCAAATGCTACACCAGAGCAACGCATTGAAGCTACTGTTGGGTACTTGGGTGCTTCCTATGACGTTCCATCATTGGTAGACAAACTCCTCCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGATACGACTAATGCGTCTGCACCTATCAAAATGTATGGTACTGATGTTATTGATACTGGGTTACTACATATAAGCAATGTGGATTTTGGGGATCCTACGCGAAAACATGAGATGCATTGCAGGTTCAAGCACAAGCCTCCACTACCTTGGACAGCAATCAATGCATCAGTTGGGGTACTTGTTATCACTTTGCTTCTTGGTCATATTTTTTATGCAGCAATCAGTCGAATAGCAAAAGTGGAGGATGACTACCGTGAAATGATGGGGCTAAAGGTTCGCGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTGGCAACAGTTTCACATGAGATTAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAACTAGATGAAAACCAGATGGATTGCGCTCAGACTGCTCACAAGAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGGAAGCTTGAACTTGAAGCTGTAGAATTTGATCCACGTTCTATCCTAGATGAAGTCCTGTCACTTTTCTCTGGAAAATCTAATGAAATAGGAATTGAGTTGGCTGTTTATGTATCCAAAATGGTGCCAGAAGTTGTCATTGGTGATCCTAAACGATTCTGGCAAATAATTACTAATCTGGTTAGAAATTCACTTAAGTTCACTCATGTTAAAGGACATGTGTTTGTATCGGTTCATATGGCAAATGAAGTAAAGAGCCCACTTCACGATATGGATGTAGTCCTGAGTCAAGGGTTCCGGGACATGTCAGACAGAACCTATAATTCATTGAGTGGTTTTCCTGTTGTCAATAGATGGAAAAGCTGGGCAAACTTCAAAAAGTTAAGCAGTATGAATCTGATGGATGAGTCTGGAGTGATTCAATTACTAGTGACAGTTGAGGATACAGGTATAGGAATTCCCTTGGATGCACAAAACCGCATATTCACCCCTTTTATGCAAGCTGATAGTTCAACCTCACGAACATATGGTGGGACTGGAATAGGACTGAGCATTAGTAAATGTTTAGTCGACCTCATGAGAGGAGAAATTGGATTTGTAAGTGAACCTGGAACTGGCAGTACCTTTTCTTTTAGTGCAACTTTCAGGATGCCAAAAGCCTCATCTCTGGATACAAAGCGGCAGCAGTGCAATCCTTTTGTTTCAGAGCTTCAAGGATTGAGAGCACTTGTGGTGGATAGAAGAAAAATTCACGCTGAAGTTACAAGATATTATCTGCAGAGGTTGGGAATGTCCGTGGATGTTGCGTATAGTCTCAACTCAGCTTACTCTTATCTATTTGGTTCTTCCAACAAGAGTATTTCTCAACAGTTGGAAATGATTGTGATAGACGAGGATGCTTTGGATAAAGAAAGTAGTCTATTGTATGTCATCAAGAAGCAGAGGCTGAATGACATCAAAAGAGACCCAAAAAGTTTTCCCAAGATTTTTCTCTTGGCAAACAACCTTAGTCCTGATGAACGTGGTGAGCTGAAATCTGTTGGTGTTGTAGATGATATACTAATGAAACCTCTTTGGTTTAGTGTTTTGATTCCCTCCTACAGAGAAGCCATTGGAAATGAGAAGAAGCAAATAATTAGACAGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAAACATATTTTGGTGGTTGACGATAATGCAGTGAACAGAAAAGTAGCAGAAGGTGTGCTACGAAGATATGGGGCAAAAGTAACCTGTGTGGAGGGTGGCAGGGCGGCCTTAAAGATACTTAAGCCACCTCATAGTGTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGGTTTGAAGTGACCAGACAAATCCGCTGTCTGGAGAAAGGGTTCAATGAAAAAATTGCACGTGGTGAAGCATCAACAGAGATATTTGGTAATGTGGTTCATTGGCACATGCCGATATTGGCCATGACAGCTGATGCAACTCAAGCTTCAATAGAAGAGTGCAATAGGTGTGGGATGGATGACTATGTGTCAAAGCCATTCGAAGAAGAACAGCTCTACAAAGCAGTGGCACGTTGCTTTGGGTCTGGTTGA 3672 0.4139 MSVNRKLTGLNGRMPPNSRSGKSNEASNESNSSLRKCKKKKPFFVWGFLGVVALGIVWFFISSHCDSFMLRKEKRLGDCEERARILLQRHNISKKQLHAFVSFFSVSDQILSQCIDERRVQKLLSRDLDNNLQMIFSENREFHKEHTCVTGQVELMEQCPVLNDSVQRNLESLLLMEKTVSMASYSAIMSNFVNNLLHGKNIVQSWVLELVAIQGYLTLCIGCWWILVVITICCRLAGFPLFWNQKLVSQPKQSQHSAGQNPKGAGSWRKKLLVTFVLLGMVVSVWLFWHLNNDIMRRREEMLTNMCDERAHMLQDQFNVSMNHVHSLAILVSTFHHSKHPSTIDQKTFGEYTERTSFERPLTSGVAYALKVLHSDREHFEKQHGWTIKKMETENETLVQDCIPENLNPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNDNFPPNATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPIKMYGTDVIDTGLLHISNVDFGDPTRKHEMHCRFKHKPPLPWTAINASVGVLVITLLLGHIFYAAISRIAKVEDDYREMMGLKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVEFDPRSILDEVLSLFSGKSNEIGIELAVYVSKMVPEVVIGDPKRFWQIITNLVRNSLKFTHVKGHVFVSVHMANEVKSPLHDMDVVLSQGFRDMSDRTYNSLSGFPVVNRWKSWANFKKLSSMNLMDESGVIQLLVTVEDTGIGIPLDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMRGEIGFVSEPGTGSTFSFSATFRMPKASSLDTKRQQCNPFVSELQGLRALVVDRRKIHAEVTRYYLQRLGMSVDVAYSLNSAYSYLFGSSNKSISQQLEMIVIDEDALDKESSLLYVIKKQRLNDIKRDPKSFPKIFLLANNLSPDERGELKSVGVVDDILMKPLWFSVLIPSYREAIGNEKKQIIRQKEPNLGNLLRQKHILVVDDNAVNRKVAEGVLRRYGAKVTCVEGGRAALKILKPPHSVDACFMDLQMPEMDGFEVTRQIRCLEKGFNEKIARGEASTEIFGNVVHWHMPILAMTADATQASIEECNRCGMDDYVSKPFEEEQLYKAVARCFGSG 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2856 1223 FunFam Histidine kinase 4 597 688 - -
Alju08g2856 1223 SMART HisKA_10 625 690 IPR003661 GO:0000155|GO:0007165
Alju08g2856 1223 Pfam His Kinase A (phospho-acceptor) domain 625 690 IPR003661 GO:0000155|GO:0007165
Alju08g2856 1223 ProSiteProfiles CHASE domain profile. 340 564 IPR006189 -
Alju08g2856 1223 Gene3D - 926 1067 - -
Alju08g2856 1223 SMART HKATPase_4 737 906 IPR003594 -
Alju08g2856 1223 Gene3D CHASE domain 344 571 IPR042240 -
Alju08g2856 1223 Gene3D - 65 108 - -
Alju08g2856 1223 Gene3D - 291 343 - -
Alju08g2856 1223 ProSiteProfiles Response regulatory domain profile. 930 1060 IPR001789 GO:0000160
Alju08g2856 1223 MobiDBLite consensus disorder prediction 1 33 - -
Alju08g2856 1223 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 679 901 IPR036890 -
Alju08g2856 1223 Pfam CHASE domain 343 537 IPR006189 -
Alju08g2856 1223 SUPERFAMILY CheY-like 925 1058 IPR011006 -
Alju08g2856 1223 CDD HisKA 625 686 IPR003661 GO:0000155|GO:0007165
Alju08g2856 1223 CDD HATPase_EvgS-ArcB-TorS-like 744 904 - -
Alju08g2856 1223 CDD REC_hyHK_CKI1_RcsC-like 1084 1216 - -
Alju08g2856 1223 Gene3D - 1081 1222 - -
Alju08g2856 1223 FunFam Histidine kinase 4 344 571 - -
Alju08g2856 1223 PRINTS Bacterial sensor protein C-terminal signature 831 845 IPR004358 GO:0016310|GO:0016772
Alju08g2856 1223 PRINTS Bacterial sensor protein C-terminal signature 866 884 IPR004358 GO:0016310|GO:0016772
Alju08g2856 1223 PRINTS Bacterial sensor protein C-terminal signature 849 859 IPR004358 GO:0016310|GO:0016772
Alju08g2856 1223 PRINTS Bacterial sensor protein C-terminal signature 890 903 IPR004358 GO:0016310|GO:0016772
Alju08g2856 1223 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 737 902 IPR003594 -
Alju08g2856 1223 PANTHER TWO-COMPONENT HISTIDINE KINASE 274 1214 - -
Alju08g2856 1223 SMART CHASE_2 340 539 IPR006189 -
Alju08g2856 1223 ProSiteProfiles Histidine kinase domain profile. 632 906 IPR005467 -
Alju08g2856 1223 SMART REC_2 1082 1216 IPR001789 GO:0000160
Alju08g2856 1223 Gene3D - 689 909 IPR036890 -
Alju08g2856 1223 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 612 691 IPR036097 GO:0000155|GO:0007165
Alju08g2856 1223 Gene3D - 597 688 - -
Alju08g2856 1223 MobiDBLite consensus disorder prediction 1 31 - -
Alju08g2856 1223 Pfam Response regulator receiver domain 1084 1151 IPR001789 GO:0000160
Alju08g2856 1223 ProSiteProfiles Response regulatory domain profile. 1083 1220 IPR001789 GO:0000160
Alju08g2856 1223 SUPERFAMILY CheY-like 1081 1220 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2856 Alju-ChrAlju08 53685657 53698563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2856 40 171 Miscellaneous Gene Families AT5G35750 26.761 5.62e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju08g2856 CHASE 6.6e-35 CL0165