Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2853 ATGGTTTCTTCAGACAAAAGTGCTGATCGCAATGTTTCTTCTGATAAATTGCATCAGAGGCTGAGTTCTCAGAGCGATATCACTGTTTCACAAGAGACTTGTGATGATAAAGTTGATTCATCCAACCCGGAGGGAGCAAGAAGAGTTCCTTCTGTTGCAGCTGAGAAAGAAGTGCAGGATTCTGATGCTACTCCAGATGCACTGCAATCAGATCAAGAAGGAAGTGCTTGTACTTCACCACTTCAGAGATCTTTGCAGAGTCCTAATACTGATCAGCGTCCATTACAATCTAGTGAGGATAGTCCCTCCATAGTATGTGAAAAGAGTTCAAAGGACAGTGTAGCTGAAAAAGGAGTGCGGGATTCTGATGCTACTGCCAATGCAGGGAAATTGGAGCAAAGGACTACATGCTCTTTACATGAGAAACCCCTGCAAAATCCTAGTTCCATTCCACGTGCATTACATTGTGGTCAGGATGGTCCCTCTATAGCACGTGAAAAAGTCTCAAAGGATGGATATAATTGGCGAAAATATGGCCAGAAAAATGTTAAGGGCAATGAATATATAAGGAGCTATTACAAGTGCACACATCCCAACTGCCCAGCGAAGAAGCAATTGGAACAGTCAAATAGTGGACAGATTATAGATACCTTTTGCATCGGTCAGCATAATCATCCCCAAGTGAACTGTTCACGACCTGTTGAAGAAAGATCAAGCAAGCCCTCTCTAGCTGACATGAAAGACAAAACATCCATTGAGCAAGGATGCGTGCCTCAACAGATCAAGTCTCTAGAAACTCATCGGGTTTCAACAGTTTCCACAATGAATGAGGTCAAAGCTGCACCTTTACAGTCGATTAGAACAAGGGATGTGGTTCTTGCCAATGAGGATCCTGAGTCAAAACGCCTGAAGAAAAACAATATTAATGCTGATGCCCCTGTGGTTGAGAAGTCAGTTGGTGAATCCCGTTTTGTTGTTCAGACTTCAAGTGAGGTTGATTTTATTAATGATGGGTATCGGTGGCGCAAGTATGGGCAGAAACTAGTAAAAGGAAATCCAAATCCAAGAAGTTACTACCGGTGCTCAAGTCCCGGCTGCCCTGTCAAAAAGCACGTGGAAAGGGCCTCTCATGATCAAAAAATTGTGATAACCACCTATGAGGGACATCATGATCATGAAAGCCCCTCCGGAAGAACTGTTATTCATAACGGAATAGCAGATACTTCCACAGCAATCATCAACAGCGACTCGGGAACCAAATCCGGGGAAAACTCTGTTTGTGTTCATCCAGCAGAACAAGAGTCACAGGAGCAGCCAAATCCAAATCCAAATCCAAATGGTGAGCAAATAGATAAACCAAAGACTTGTGATATGGATGACTCTCAAGGGATTGCTACTCAAGTCTCTGAAAGTGAGAGAGAACAAAATGGCAACATGCGTGTGGGAAATGATTCAGGTTCTGAGCCTCCATGTAGATTAAATAAGCAGCAGAAAGATGAGGAGGTGAGAACCATATCAGAAGGAGGCAAGTTAAACAAGCAATCTGAAGCTGATGCAGAACCCATCCAAAGCTAA 1575 0.433 MVSSDKSADRNVSSDKLHQRLSSQSDITVSQETCDDKVDSSNPEGARRVPSVAAEKEVQDSDATPDALQSDQEGSACTSPLQRSLQSPNTDQRPLQSSEDSPSIVCEKSSKDSVAEKGVRDSDATANAGKLEQRTTCSLHEKPLQNPSSIPRALHCGQDGPSIAREKVSKDGYNWRKYGQKNVKGNEYIRSYYKCTHPNCPAKKQLEQSNSGQIIDTFCIGQHNHPQVNCSRPVEERSSKPSLADMKDKTSIEQGCVPQQIKSLETHRVSTVSTMNEVKAAPLQSIRTRDVVLANEDPESKRLKKNNINADAPVVEKSVGESRFVVQTSSEVDFINDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDQKIVITTYEGHHDHESPSGRTVIHNGIADTSTAIINSDSGTKSGENSVCVHPAEQESQEQPNPNPNPNGEQIDKPKTCDMDDSQGIATQVSESEREQNGNMRVGNDSGSEPPCRLNKQQKDEEVRTISEGGKLNKQSEADAEPIQS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2853 524 SMART WRKY_cls 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 SMART WRKY_cls 335 394 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 MobiDBLite consensus disorder prediction 17 36 - -
Alju08g2853 524 SUPERFAMILY WRKY DNA-binding domain 327 395 IPR036576 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 FunFam WRKY transcription factor 57 321 395 - -
Alju08g2853 524 MobiDBLite consensus disorder prediction 430 524 - -
Alju08g2853 524 SUPERFAMILY WRKY DNA-binding domain 166 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 MobiDBLite consensus disorder prediction 1 152 - -
Alju08g2853 524 Pfam WRKY DNA -binding domain 336 393 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 Pfam WRKY DNA -binding domain 170 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 MobiDBLite consensus disorder prediction 460 483 - -
Alju08g2853 524 FunFam WRKY transcription factor 160 229 - -
Alju08g2853 524 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 433 IPR044810 GO:0003700
Alju08g2853 524 MobiDBLite consensus disorder prediction 230 250 - -
Alju08g2853 524 MobiDBLite consensus disorder prediction 493 507 - -
Alju08g2853 524 MobiDBLite consensus disorder prediction 128 145 - -
Alju08g2853 524 ProSiteProfiles WRKY domain profile. 330 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 MobiDBLite consensus disorder prediction 63 108 - -
Alju08g2853 524 Gene3D WRKY domain 162 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 MobiDBLite consensus disorder prediction 430 449 - -
Alju08g2853 524 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g2853 524 Gene3D WRKY domain 322 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2853 Alju-ChrAlju08 53651372 53654827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2853 143 408 WRKY Transcription Factor Family AT2G04880 51.460 3.09e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Alju08g2853 WRKY 1.8e-25 CL0274