Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2722 ATGAGAATCGGAAACGCCATGAGAAGAGGCAGAGAGCTGCTTCGACTTTATTCTTCTCTTCGCTGTGGAACTTCGAAATCACCATCTTCTACTTCTGCTTCTCGTCGGTTTATTATTCGCTTCAGTTCTTCTTTCTCTTCAAACCCTTGTGATGAGGACGATAAGAGATCACCCAAGTCTCAAAGGGATTCGATGCTTCTAGAAAAATTTAGACTCAGAAAACTCAAAGGTTCTTCTACATCTTCACAAAGTAGCCCCCAAGCATCATGTTCAACTTCAGAGAAGGTAGTTGAAAAGGATTTGAAGAATGAGGATGAATCCTCTAAGGTAGTGAACGATTTTAAGGAGTTAGGTTTGTGTGAGGAGCTTATTGAGGTTCTGGAGAAACTAGGGCTTCTTGTTCCCACTGAGATTCAATGTGTAGGAATTCCTGCTGTTTTGGAAGGGAGAAGTGTGTTGATGAGTTCAGTCTCTGGGCCTGATAGGATTTTGGCCTACTTGTTGCCCCTTATACAGCTTTTGAGACAAGATACGAAGTTGCCCCATTCAAATTTGCGGCATCCTCGGGCCATTGTGCTTTGTGCCACGGAGGAGAAAGCTGAACAGTGCTTTAATGCTGCAAAATATATCATCCATCAAGCTGAACTAAAATCTACGAAGGATGATTCACTGAATACTGAGAAGTCAGATGTTTCAATTGGCCTTGTAATCGGACCTCCTGGTGAGATTCTTCAGTACATTGAAGAGGGAACAGTTATTCCTGAAGAAATAAGATATTTGGTAGTAGATGATGCAGAGTGCATGTTTGATAGTGGCCTCGGCCTCGAAGTTCGCAAGATTCTCAGACACTTGCCAGATTATACTTCAGAGTTAACTACCAAAGGGTTGCAAACTGTTTTGGTTGCTTCAACAATAACAGAGGTATTGGGTGAGGAGTCTCCTGTTATAAAGCGCCTGGAGGATAATCATGCTGGACATGTTTCTGCAATGTTGTTAGAAATGGATGGTGCAGAAGAAGTCTTTCAACTCACAGAATCCTTGGATGCTTTAAGGCAAAAGATGACAGAGGCCATGAATTCCTTTCTTAAATGA 1092 0.4212 MRIGNAMRRGRELLRLYSSLRCGTSKSPSSTSASRRFIIRFSSSFSSNPCDEDDKRSPKSQRDSMLLEKFRLRKLKGSSTSSQSSPQASCSTSEKVVEKDLKNEDESSKVVNDFKELGLCEELIEVLEKLGLLVPTEIQCVGIPAVLEGRSVLMSSVSGPDRILAYLLPLIQLLRQDTKLPHSNLRHPRAIVLCATEEKAEQCFNAAKYIIHQAELKSTKDDSLNTEKSDVSIGLVIGPPGEILQYIEEGTVIPEEIRYLVVDDAECMFDSGLGLEVRKILRHLPDYTSELTTKGLQTVLVASTITEVLGEESPVIKRLEDNHAGHVSAMLLEMDGAEEVFQLTESLDALRQKMTEAMNSFLK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2722 363 SMART poly_2 301 361 IPR002004 GO:0003723
Alju08g2722 363 MobiDBLite consensus disorder prediction 76 94 - -
Alju08g2722 363 MobiDBLite consensus disorder prediction 49 63 - -
Alju08g2722 363 Pfam Poly-adenylate binding protein, unique domain 314 359 IPR002004 GO:0003723
Alju08g2722 363 Pfam DEAD/DEAH box helicase 136 306 IPR011545 GO:0003676|GO:0005524
Alju08g2722 363 SUPERFAMILY PABC (PABP) domain 307 359 IPR036053 GO:0003723
Alju08g2722 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 308 IPR027417 -
Alju08g2722 363 MobiDBLite consensus disorder prediction 75 102 - -
Alju08g2722 363 Gene3D - 311 362 - -
Alju08g2722 363 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 50 307 - -
Alju08g2722 363 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Alju08g2722 363 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 323 IPR014001 -
Alju08g2722 363 Gene3D - 73 310 IPR027417 -
Alju08g2722 363 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2722 Alju-ChrAlju08 48255597 48258202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2722 101 285 Eukaryotic Initiation Factors Gene Family AT3G13920 22.680 9.53e-07 48.5