Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2657 ATGGAAACTGACAGTTATGACGTCTCAAAGGCTGAAGAATTCAAAGTTCTTGCAAACGAAGCATTCAATGCTCGCAAATATGCCCAAGCTATTGATTTATATACTCAAGCAATTGAACTGAACAGTCGAAATGCTGTTTACTGGGCCAATCGTGCCTTTGCACATCTTAGGCTTGAGGAATATGGCAGTGCAATACAAGATGCCGCAAAGGCCATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGACGAGGTGCTGCCCATCTTGCCATGGGGAAATTCAAGGAAGCTCTGAAGGATTTTCAACAGGTCAAGAAAATGTGCCCACATGATCCTGATGCAACAAGGAAATTAAAGGAATGTGAAAAGGCAGTTATGAAACTCAAATTTGAAGAAGCAATTTCTGCACCAGATGCTGAAAGGCGTTCAGTAGCTGAATACATAGATTTCCGTTCTATAGGAAAGGGTCACAATTCTTTGATGCCCACCAAATTGGCCATAGCGGCAGCGACAGTAGCAGTTATTGCAGCAGTTGTGATGTTGTTCAGGACATCAGTGGCCACAATAGTAGCTGCAGTTGTGGTTGGTCTGCTGTTGCTTTTTGGGGCATATTGGTGGAGTAGCTACAATGCTGGTATAATTAGCAGGAGTGATTTACATGACCTAGATGTGGAGCCACAATACTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGATGATTTTAAGAATCAAAAGTGCCTACATAAAAGGTACGCCTACCAAATTGTATTGCAAACAAGAGAGATGTTGTTGGCCTTGCCTCCTCTTGTTGATATAAATGTTCCTGATGGCAATCATTTCACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTCTTAAATATCTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCATATCTTTTTAATGGTGACTTTGTGGATAGAGGATCTTTTTCACTGGAAGTCATCCTTACTTTGTTTGCATTCAAGTGCATGTCTCCGTCAGCCATATATCTAGCTAGAGGGAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGCGAGGTCCGCTCAAAGTTAAGCGACAAATTTGTGGAACTATTTGCAGAAGTCTTCTGCTGTTTACCTTTGGCTCATGTGATAAACGGCAAGGTTTTTGTGGTTCATGGCGGTCTTTTTAGTGTTGATGGGGTCAAAGTCTCTGACATTAGAGCAATTAACAGATTTTGTGAGCCTCCAGAAGAAGGATTAATGTGTGAATTGCTATGGAGTGATCCACAACCTCTTCCTGGAAGGGGCCCAAGCAAGCGTGGTGTGGGTCTTTCTTTTGGCCCAGATGTGACAAAAAGTTTCTTGCAGGAAAATAGTTTAGAGTTAGTTGTCAGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTATTCTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCATTTATTCGGTTTGAAGCACCAGATTTGAAGCCAAACATTGTTACCTACTCTGCAGTGCCACACCCAGATGTGAAGCCAATGGCTTATGCAAACAACTTTCTTCGGATGTTCTCATAA 1656 0.4149 METDSYDVSKAEEFKVLANEAFNARKYAQAIDLYTQAIELNSRNAVYWANRAFAHLRLEEYGSAIQDAAKAIEVDPKYSKGYYRRGAAHLAMGKFKEALKDFQQVKKMCPHDPDATRKLKECEKAVMKLKFEEAISAPDAERRSVAEYIDFRSIGKGHNSLMPTKLAIAAATVAVIAAVVMLFRTSVATIVAAVVVGLLLLFGAYWWSSYNAGIISRSDLHDLDVEPQYSGARIEGDVVTLDFVKKMMDDFKNQKCLHKRYAYQIVLQTREMLLALPPLVDINVPDGNHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDKFVELFAEVFCCLPLAHVINGKVFVVHGGLFSVDGVKVSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGPDVTKSFLQENSLELVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTYSAVPHPDVKPMAYANNFLRMFS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2657 551 SMART pp2a_7 257 533 IPR006186 GO:0016787
Alju08g2657 551 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Alju08g2657 551 PRINTS Serine/threonine phosphatase family signature 319 346 IPR006186 GO:0016787
Alju08g2657 551 PRINTS Serine/threonine phosphatase family signature 494 510 IPR006186 GO:0016787
Alju08g2657 551 PRINTS Serine/threonine phosphatase family signature 416 443 IPR006186 GO:0016787
Alju08g2657 551 PRINTS Serine/threonine phosphatase family signature 289 316 IPR006186 GO:0016787
Alju08g2657 551 PRINTS Serine/threonine phosphatase family signature 472 492 IPR006186 GO:0016787
Alju08g2657 551 PRINTS Serine/threonine phosphatase family signature 386 412 IPR006186 GO:0016787
Alju08g2657 551 PRINTS Serine/threonine phosphatase family signature 352 376 IPR006186 GO:0016787
Alju08g2657 551 CDD MPP_PP5_C 229 544 IPR041753 -
Alju08g2657 551 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Alju08g2657 551 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Alju08g2657 551 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 544 - -
Alju08g2657 551 SUPERFAMILY Metallo-dependent phosphatases 238 545 IPR029052 -
Alju08g2657 551 Pfam Calcineurin-like phosphoesterase 290 483 IPR004843 GO:0016787
Alju08g2657 551 Gene3D - 208 550 IPR029052 -
Alju08g2657 551 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Alju08g2657 551 SMART tpr_5 45 78 IPR019734 GO:0005515
Alju08g2657 551 SMART tpr_5 79 112 IPR019734 GO:0005515
Alju08g2657 551 SMART tpr_5 11 44 IPR019734 GO:0005515
Alju08g2657 551 Gene3D Tetratricopeptide repeat domain 3 154 IPR011990 GO:0005515
Alju08g2657 551 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Alju08g2657 551 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Alju08g2657 551 Pfam Tetratricopeptide repeat 17 78 - -
Alju08g2657 551 PIRSF PPPtase_5 1 551 - -
Alju08g2657 551 FunFam Serine/threonine-protein phosphatase 5 208 550 - -
Alju08g2657 551 Pfam PPP5 TPR repeat region 214 281 IPR013235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2657 Alju-ChrAlju08 42777726 42786168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2657 288 478 Calmodulin-binding Proteins AT5G63870 36.889 3.10e-41 149