Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2636 ATGAGCTCCAGGAAGGGTGACAATACTCACTCTGGTGATGGTGCCAGTCCTGGGAAAATCTTTATTGGAGGGCTAGCTAGAGATACAACACTCGAACAATTCGTCAAGTATTTTGAGAAGTATGGGGAGATAACAGACTCGGTCATAATGAAAGATCGGCATACGGGTCGACCTAGGGGTTTTGGTTTCATTACCTACGCAGATCCTTCTGTTGTTGACCATGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTGGAGATCAAAAGGACAATTCCAAAGGGCTCATCACAAGCTAATGATTTTAAAACTAAGAAGATATTTGTAGGTGGTATTCCGACCTCAGTAAGCGAAGATGAATTGAAGAACTTCTTTTCTAAGTATGGAAAGGTTGTGGAGCATGAGATCATTCGTGATCATACTACTAAACGCTCTCGAGGATTTGGATTTATAGTCTTTGACAGTGAAAAAATTGTTGATAATTTGCTGGCAAATGGAAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACCCATCATCTTTTCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGATTTGGCGAATCCTATAGCAGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTATGGTGGGTATGGTGGTGACGAATTTGGTGATAGTTTTGGAGGCTATGCTGGCGGTGGTGGTTTTGCTGGCTATCGAGGTGATTCATCATTTGGCTATTCTAGTCGATATGGTTCATATATGGGGGGCCTTGGTGGTGGATATGGTGGAAGTGGACTAGGGGCATATGGGCGAGGTGCTGGGGGCTTTGCAAGCTATGGTGGACCTGGTTCTGGTGGGGGTTATGACTCTGGTCCTGGTGCTGGCTATGCGGGGCCAGGGGCACTGTATGGTAGTAGAGGAGGTTATGGAGGCAGTAGTCGTTACCACCCTTATGCAAGATAG 1044 0.4588 MSSRKGDNTHSGDGASPGKIFIGGLARDTTLEQFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDHVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKIVDNLLANGNMIDMAGTQVEIKKAEPKKASNPSSFPPFGSDRARPYSDGYGGFGESYSSFGSGSFGPASYRSLGGFGSRLGDYGGYGGDEFGDSFGGYAGGGGFAGYRGDSSFGYSSRYGSYMGGLGGGYGGSGLGAYGRGAGGFASYGGPGSGGGYDSGPGAGYAGPGALYGSRGGYGGSSRYHPYAR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2636 347 SUPERFAMILY RNA-binding domain, RBD 102 213 IPR035979 GO:0003676
Alju08g2636 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 223 - -
Alju08g2636 347 Gene3D - 97 221 IPR012677 -
Alju08g2636 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Alju08g2636 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Alju08g2636 347 Gene3D - 18 96 IPR012677 -
Alju08g2636 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Alju08g2636 347 SMART rrm1_1 19 90 IPR000504 GO:0003723
Alju08g2636 347 SMART rrm1_1 107 180 IPR000504 GO:0003723
Alju08g2636 347 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 347 - -
Alju08g2636 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Alju08g2636 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Alju08g2636 347 SUPERFAMILY RNA-binding domain, RBD 11 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2636 Alju-ChrAlju08 41742219 41744167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2636 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 26.455 1.00e-13 70.5