Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2634 ATGTCGAATCCTAAGCATCAGCGTCCTATTGCGGTCTATTCGTCCCTTCGGAGTCACGCTGCGAGTGCCGCTGAACCAGATGGACAATCCTCAATCAGAAGCCCCAAGTCTTACCCACCCGCGAACTCTCTATATGAGGACCTTGTTAGCAGTTCGGACCTTTTCTGGAGAAACCTTCAGGACTTTCACAAATCCTTAGGCACCAAATTAAAAGTTCCTACTATTGGAGGAAAACCTCTAGATCTATATCACCTTTTTATTGAAGTCACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCAAACACCGTAACCAGCACATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGGTTTATTATTTTCGGAAGCAAGTCCCTTCTTATGCAGTTCCTGATTCTGGTAGCAGGAGCATGTTGAGCTCGAGTGAAGGGGCTGCTTTGAATGATTTACCAGTTAGTACGCTTGAGCAGCAGCTCGGCTCTTTGGTGCCTGGCACTATCGACTTGAAATTTGATGGTGGATATGTAGTCACTGTGAATCTGGGTTCTGACCAGCTGAAAGGTGTGCTGTATCATGTGCCTCACAATGCATCCCTGAGTTCTGCATCCATACCTGTTTCTCAGAATCGAAAGAGATCAAAGTTGGGTTCACAGGATCCATCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCAGAACACTATGCCAGGCTAAAGCCTTCATATTGTGGACAAGAGAGAGCAATTAGTAAGAAGATTGGATTCTTATGGAACCATCTCACTGAAGCAGAAAGACAGATTTATCAGGAGAAAGGAAGGAGAGATAAGGAGAGATACAGGAATGAAATGGAGGAATACAAAGCATCCAATAATTTGACTCCTCAGTAG 957 0.4389 MSNPKHQRPIAVYSSLRSHAASAAEPDGQSSIRSPKSYPPANSLYEDLVSSSDLFWRNLQDFHKSLGTKLKVPTIGGKPLDLYHLFIEVTSRGGLEKVIGDRKWKEVITVFKFPNTVTSTSFALRKYYQSLLYDFEQVYYFRKQVPSYAVPDSGSRSMLSSSEGAALNDLPVSTLEQQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPHNASLSSASIPVSQNRKRSKLGSQDPSRPKSNRSGYNFFFAEHYARLKPSYCGQERAISKKIGFLWNHLTEAERQIYQEKGRRDKERYRNEMEEYKASNNLTPQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2634 318 MobiDBLite consensus disorder prediction 222 248 - -
Alju08g2634 318 ProSiteProfiles ARID domain profile. 49 140 IPR001606 GO:0003677
Alju08g2634 318 Gene3D - 37 150 IPR036431 GO:0003677
Alju08g2634 318 Pfam ARID/BRIGHT DNA binding domain 53 136 IPR001606 GO:0003677
Alju08g2634 318 CDD ARID_HMGB9-like 51 136 IPR045303 GO:0003677
Alju08g2634 318 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 31 313 - -
Alju08g2634 318 SMART bright_3 50 141 IPR001606 GO:0003677
Alju08g2634 318 Pfam HMG (high mobility group) box 243 310 IPR009071 -
Alju08g2634 318 SMART hmgende2 242 311 IPR009071 -
Alju08g2634 318 SUPERFAMILY HMG-box 237 312 IPR036910 -
Alju08g2634 318 CDD HMG-box_AtHMGB9-like 243 309 - -
Alju08g2634 318 Coils Coil 292 312 - -
Alju08g2634 318 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Alju08g2634 318 Gene3D High mobility group box domain 226 316 IPR036910 -
Alju08g2634 318 SUPERFAMILY ARID-like 50 149 IPR036431 GO:0003677
Alju08g2634 318 SMART ARID_2 46 136 - -
Alju08g2634 318 MobiDBLite consensus disorder prediction 296 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2634 Alju-ChrAlju08 41701433 41706931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2634 26 313 ARID Transcription Factor Family AT3G13350 50.645 6.28e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Alju08g2634 ARID 2.4e-20 CL0123