Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2624 ATGACACTTTGGAACTTTCAATTGCTGAAAAACTCGGATGGATTGAGTCGGAGCAACCAACCGAACAAAGGCAAGGAGCTCCGACTAGCCATGGAGATGCAACAGCTTCTGAGTATGGGGTTCCCGGATGAGCTAGCAGCCGAAGCCCTAGCTGCTACTGGCGGCAAATCCACCATTAAAGCCACCGAATGGATCTTAAACCACAAAGCAACTTCTTCTAACCATGTCTCTACCTCAAACCCTTCTCCAGTTCAGCCTAAACTCGATCGCTTTTTTCCGTTTCAATCCAAACCCTCTTCTACAGTCACAACCTCATCACAAGCAATTCAACAAGAGCAAGAAGATGCAGATTTACATTTAGAAGAATCAACCCCAAACGTTAATCCGCCATCCAAACGTCTCAAACTTTCACCGTCTAACACCAAACCCGGTTCTCCTGTCTTCCTGAATCATTTTCGTGGTCACAAGAGTGCTGATAGTGCTTCTAAATCCAAACCCCACGAGCCCTTATATGAGCGAATGCGTCCCAGAACCATTGATGATGTTATCGGTCAGGACCATTTGGTTGCTTGTAATTCGCTCCTTCGCTCGGCTATTGAACGCGGCCGTCTCCCTTCCATCATATTCTGGGGTCCTCCTGGTACAGGTAAGACCTCTATTGCTAAAGCCATTGTTAATTCAGCAAGTTCTTCTCAGAAACAACAATGCCCCTCTTATCGCTTTGTTTCGTTATCTGCTGTGACTAGTGGTGTTAAAGATGTGAGGGACGCGGTTGATGAGGCTAGGAAATTGAGAGCTAAGTGTAGTCAAAGAACTGTTCTTTTTGTGGATGAGGTTCACAGGTTTAGTAAGTCTCAACAGGACTCTTTTTTGCCGGTTATTGAAGATGGAAGTATTGTCTTCGTTGGAGCCACTACTGAAAACCCTTCCTTCCATTTGATTACACCATTGCTGTCTCGGTGCCGTGTACTTACTCTAAACCCCTTGAAACCCCACCATGTTGAGATGATTCTAAAGAGGGCTGTGAATAATCTGGACAAAGGATTGGTGCAAAGCATTGGTTTACAAGTTGATGTACCTGAAGATGTAATAAGTTTTATAGCTAACAATTGTGATGGTGATGCTCGGGTGGCATTGAATGCATTGGAAATTGCAGCTGTTACAGCAGCTGCTCGATCACAAGATGATAAGAAATCTAAGGATGTCAAAGAAACAGAAGGCGTGGATGGTCAAATAAACCAAGAGAATAGAGCTGGTCCATCTCTTGATATTGTTACTCTGGATGATGCAAAAGAGGCTCTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTAATTAGTGCACTTCACAAATCAATGAGGGGAAGTGATGCTAATGCGGCAATATATTGGTTGGCAAGAATGTTGGAAGGAGGAGAAGAGCCTCTTTACATTGCGCGGAGATTGATAAGGTTTGCAAGTGAGGACATTGGGTTGGCTGATCCGTCTGCTCTCAATCAGGCTGTTTCGTGTTACCAGGCCTGCCACTTCTTGGGTATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTATTTGGCCTTAGCTCCTAAATCAATTGCTGTATATCGAGCAATGCAAGCTGCTCAGAAGGTCATCATGGAATCAGTTGGACAGAATGAGGGAGTGCCTCTTCATCTAAGAAATGCACCAACTAAACTAATGAAGGAACTTGGCTACGGGAGGGGATATATATACACTCCTGATAATCCTTCTTTGACCCAGGACTACTTACCACCCTCACTAAATGGGTACAAGTTTCTTGATTGGCCTGACAGGAATACCTCTAACTGA 1854 0.445 MTLWNFQLLKNSDGLSRSNQPNKGKELRLAMEMQQLLSMGFPDELAAEALAATGGKSTIKATEWILNHKATSSNHVSTSNPSPVQPKLDRFFPFQSKPSSTVTTSSQAIQQEQEDADLHLEESTPNVNPPSKRLKLSPSNTKPGSPVFLNHFRGHKSADSASKSKPHEPLYERMRPRTIDDVIGQDHLVACNSLLRSAIERGRLPSIIFWGPPGTGKTSIAKAIVNSASSSQKQQCPSYRFVSLSAVTSGVKDVRDAVDEARKLRAKCSQRTVLFVDEVHRFSKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHVEMILKRAVNNLDKGLVQSIGLQVDVPEDVISFIANNCDGDARVALNALEIAAVTAAARSQDDKKSKDVKETEGVDGQINQENRAGPSLDIVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDIGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIAVYRAMQAAQKVIMESVGQNEGVPLHLRNAPTKLMKELGYGRGYIYTPDNPSLTQDYLPPSLNGYKFLDWPDRNTSN 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2624 617 FunFam Replication-associated recombination protein A 160 328 - -
Alju08g2624 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 401 IPR027417 -
Alju08g2624 617 CDD HLD_clamp_RarA 329 393 - -
Alju08g2624 617 FunFam Putative AAA family ATPase 435 538 - -
Alju08g2624 617 MobiDBLite consensus disorder prediction 94 113 - -
Alju08g2624 617 Pfam UBA/TS-N domain 34 65 IPR015940 -
Alju08g2624 617 SMART AAA_5 203 329 IPR003593 GO:0016887
Alju08g2624 617 MobiDBLite consensus disorder prediction 395 410 - -
Alju08g2624 617 Gene3D - 435 538 - -
Alju08g2624 617 MobiDBLite consensus disorder prediction 124 145 - -
Alju08g2624 617 SUPERFAMILY post-AAA+ oligomerization domain-like 445 614 IPR008921 GO:0003677|GO:0006260
Alju08g2624 617 Pfam AAA C-terminal domain 356 460 IPR032423 -
Alju08g2624 617 Gene3D - 15 82 - -
Alju08g2624 617 CDD AAA 183 322 - -
Alju08g2624 617 MobiDBLite consensus disorder prediction 395 416 - -
Alju08g2624 617 FunFam AAA-type ATPase family protein 329 405 - -
Alju08g2624 617 Gene3D - 329 404 - -
Alju08g2624 617 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 31 615 - -
Alju08g2624 617 Pfam ATPase family associated with various cellular activities (AAA) 207 323 IPR003959 GO:0005524|GO:0016887
Alju08g2624 617 Gene3D - 157 327 IPR027417 -
Alju08g2624 617 MobiDBLite consensus disorder prediction 93 145 - -
Alju08g2624 617 Gene3D - 539 617 - -
Alju08g2624 617 SUPERFAMILY UBA-like 33 69 IPR009060 GO:0005515
Alju08g2624 617 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 22 68 IPR015940 -
Alju08g2624 617 SMART uba_6 29 67 IPR015940 -
Alju08g2624 617 Pfam MgsA AAA+ ATPase C terminal 461 610 IPR021886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2624 Alju-ChrAlju08 41280482 41282540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2624 169 406 Core DNA Replication Machinery Family AT1G77470 26.939 4.22e-11 63.2