Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2601 ATGTGTAAGGTCTTCAACTTAATGCCTTGGATTCATGAAGATAGGATGAAAGGGTCTGGCTATTTATTCATAAATATCACAATTAAGGATGGGAGGTTCTTGAACATTCATCCTACCTTTGTGTTCAAGTATAGAAGGTTAATAAAAATCACCAGTATATAAACAATTGAAAGCTCGCGTTCAATAGAATTAATGGAAAACGTTGAGTCCGATGAACCCGAAAAGAAGAGGCCGCATTTGAGTTCAGTATCCTCTCCCATGGCGCGGAATTCAACAAACCCATCAACCAACAACAAATGTGCTGATGTGGGAGTCTTGCAGTCTCAGAACCAGCAGCTTGTTCAACAGATAGACCTCCAAAAACAGGCATTGCATGACCTTGAAGTAAAAATTGGAGATTTAAAATACAGGCAAAATTCATATGATGACATGATAATTGCAGTAAACGAACTCTGGAGTCAGTTGGTTGATGATCTGATCCTTCTTGGAATACGAGCTGGTGGAGGCCAAAATGCATTTAACAATTTGGAGCTCCCTAATTCACTTTCTTTGTGTCCAGTGGAGGATATCTTCCTTTCCAGATTAACACAGAAAGATTTCATTGAAGCTAACAATCATGATGAGGTCAATAACTTTGTTGAGGAAGCACTTGCTCTGCGTCAGTCATCTACCAGGGAGTTATTGAAACTTCTTGAAGATACTATTGATGCTCAGATTGAAAGAACTTACTGTATTACCCAGGGTTTGGAGGGGTCAGTTTCAGAAGATGCTATCATTCAGATGTCTAAAATTGATGATATGATGAAAGAGGAGGCAAACAATTTACGTGAAGTAATTGATGCTCTCCATGTCAAGCATAAAGATTATGCTGTTGCAATTGAAAATTATATCAGCTGCCACTTAGTGGATCAATCTGAGATTAAACGTTTAGCAGGTGAACTTGATGAAAGCATGTCTGAACTTGAAGAGAGTAGGAGAAAATTAGTCAATTTGAAAATGCAGAAAGATGCAGTGATAGGGATGCAGTCGCCTGGTTCAGATGCAGTTAATGGGACTTTGTCTCCTGAAAAGCCTTCAGACAAGACAATGGGTCTGCGGGAGTTGAAAGATTCAATTGAGGAAGCAAAGATAGTGGCAGCTGACCGTCTTTCAGAGCTTCAAGATGCACAGGAAGACAATCTGACATTGAGAGGGCATTTGCAAGATCTTCAGAATGAATTGACCGATGACAAGTATGTATATTCATCACGACTATATTCTTTGGTAAATGATCAACTTCAACATTGGAATACTGAATTGGAGCGGTATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGGATCCATGTTATGAAATGGGAAAAGGAACTGAACTCAAAATTGGAGTCTGCAGATACTGCAAGGCTTACAGTTGACAATTCTGACTGTAGGATTGAAGAGCTAGAGCTTCAGTTGCAAAAGTGTACTATTGAAAAGAATGATATTGAAATAGAGATGGAAGAAGCTATACAGGATACTGGGAGAAAAGACATTAATTCTGAGTTTCATGTCATGGCTTCAGCCTTATCTAAGGAAATGGGTATGATGGAAGCTCAATTAAAACGATGGAAGGATGCAGCTCATGAGGCAGTTTCTTTACGTGAGAAAGCACATTCACTAAGATCTTTGTTAAGTGGGAAGTCTAGTGAAATAAAAAGCTTAGCAAACAAATGTTCTGAGCAAGCCGTGGAGATAAAGTCTTTAAAAACATTGATTGAAAGGCTGCAGAAGGAAAAGGTGGAATTACAATTCTTTCTGGACTTGCATGGGAAGGAGAATCATGAAAAAAGAGGTTTGGTAGAAATCAGAGAATCAGAAAGTAAAGCTCTCGCTCAAGCTGAAGTACTGAAAAATGCTTTAGATGAGCATAGTCTAGAGTTGAGGGTAAAAGCTGCCAATGAAGCTGAAGCTGCTTATGAACAAAGGCTTTCTGCAGCAGAAGCAGAAATAGAGGATCTAAGGGCCAAACTGGAAGCTTCTGAAAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTCAAAGATGCTGAGTCAGAGGCTTGTATATCTGAAATTGAGACTATTGGACAAGCATATGAAGATATGCAGACGCAGAACAAACATCTATTGCAGCAGGTGACTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAGAGCGTAAAGACAAAACAGGCACATAGCATCTTACTTTCTGAGAAGCAGGCCTTAGCTAAGCAGCTTCAACAAATTAACTCTTCAATAGAAAGTTTAAAGATGAGGATTACACATAGTGAAGACCAGATGAAAGCTCTTTTATCAGAAGCTACTAAATCTACTCAAGAGGAAAAACACCTTGCAGTTACCCTGGAGTCTGCAAAGTGGGAATTGGCTGATGCTGAAAAGGAGTTGAAGTGGCTTAAGTCTGCTATTACTTCTTCTGAGAAAGAGTATGATCAAATTCAGAAAGACTTGGAAGCTACCCAAATCGAGTTGGATGCTGAAAGGAGTTCAAGAAAGAAGCTTGAAGAAGAACTCAAGGAATTAAACATCAAAATTGATGAGCTGAGTTCCGAAACTGGAGAGACAGCAATACAAAAACTACAAGATGAAATTAGGGTTTGCAAGAACATGATCAAGTGCACAGTCTGTTCTGATCGTCCCAAGGAGGTTGTGATTGTGAAGTGTTATCATCTGTTTTGCAATCCTTGTATTCAAAGGAACTTGGAACTCCGTCATCGCAAGTGTCCTGCCTGTGGGACTGCTTTCGGTCAGAGTGATGTTCGGTTCGTGAAAATATGA 2820 0.395 MCKVFNLMPWIHEDRMKGSGYLFINITIKDGRFLNIHPTFVFKYRRLIKITSIXTIESSRSIELMENVESDEPEKKRPHLSSVSSPMARNSTNPSTNNKCADVGVLQSQNQQLVQQIDLQKQALHDLEVKIGDLKYRQNSYDDMIIAVNELWSQLVDDLILLGIRAGGGQNAFNNLELPNSLSLCPVEDIFLSRLTQKDFIEANNHDEVNNFVEEALALRQSSTRELLKLLEDTIDAQIERTYCITQGLEGSVSEDAIIQMSKIDDMMKEEANNLREVIDALHVKHKDYAVAIENYISCHLVDQSEIKRLAGELDESMSELEESRRKLVNLKMQKDAVIGMQSPGSDAVNGTLSPEKPSDKTMGLRELKDSIEEAKIVAADRLSELQDAQEDNLTLRGHLQDLQNELTDDKYVYSSRLYSLVNDQLQHWNTELERYKALTESLQAERIHVMKWEKELNSKLESADTARLTVDNSDCRIEELELQLQKCTIEKNDIEIEMEEAIQDTGRKDINSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRSLLSGKSSEIKSLANKCSEQAVEIKSLKTLIERLQKEKVELQFFLDLHGKENHEKRGLVEIRESESKALAQAEVLKNALDEHSLELRVKAANEAEAAYEQRLSAAEAEIEDLRAKLEASERDILELTEAIKVKDAESEACISEIETIGQAYEDMQTQNKHLLQQVTERDDYNIKLVSESVKTKQAHSILLSEKQALAKQLQQINSSIESLKMRITHSEDQMKALLSEATKSTQEEKHLAVTLESAKWELADAEKELKWLKSAITSSEKEYDQIQKDLEATQIELDAERSSRKKLEEELKELNIKIDELSSETGETAIQKLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2601 939 MobiDBLite consensus disorder prediction 67 99 - -
Alju08g2601 939 SUPERFAMILY RING/U-box 886 930 - -
Alju08g2601 939 Coils Coil 796 865 - -
Alju08g2601 939 SMART ring_2 887 925 IPR001841 -
Alju08g2601 939 Coils Coil 642 690 - -
Alju08g2601 939 Coils Coil 386 406 - -
Alju08g2601 939 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 886 937 IPR013083 -
Alju08g2601 939 Pfam Zinc finger, C3HC4 type (RING finger) 886 928 - -
Alju08g2601 939 Coils Coil 426 446 - -
Alju08g2601 939 Coils Coil 747 781 - -
Alju08g2601 939 MobiDBLite consensus disorder prediction 83 99 - -
Alju08g2601 939 Coils Coil 307 334 - -
Alju08g2601 939 MobiDBLite consensus disorder prediction 341 362 - -
Alju08g2601 939 Coils Coil 110 130 - -
Alju08g2601 939 PANTHER RING FINGER PROTEIN-RELATED 71 939 IPR013956 GO:0004842|GO:0010390
Alju08g2601 939 ProSitePatterns Zinc finger RING-type signature. 902 911 IPR017907 -
Alju08g2601 939 Coils Coil 471 505 - -
Alju08g2601 939 ProSiteProfiles Zinc finger RING-type profile. 887 925 IPR001841 -
Alju08g2601 939 CDD RING-HC_Bre1-like 879 935 - -
Alju08g2601 939 Coils Coil 571 591 - -
Alju08g2601 939 Gene3D - 743 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2601 Alju-ChrAlju08 39863912 39878073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2601 847 934 RAD5 or RAD16-like Gene Family AT5G05130 24.742 8.88e-08 54.3