Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2464 ATGAACAACAATCTGGCATTTCTTGCAAGATCTGTTGCAACAAAGTTTCATAGTCCTTCTCCATTGCGAATCTATTGTTCATCATCCTCAGAGTCTTCTCCTCCTTCCAGCAATAAACTCTTTGTCGGAGGGTTGTCATGGTCTGTGGATGAGAAGTCCCTCAAAGATGCTTTCGCTTCATTTGGTGAAGTCACTGAAGTGAGGATAGCATATGATAAAGACAGTGGTAGGTCTAGAGGGTTTGGGTTTGTCTTATTTTCAGATGAAGATAATGCCAAAACTGCAAAAGACGCAATGGATGGCAAGGCACTCTTAGGAAGGCCCTTGAGAATAAATTTTGCTCTTGAGAAGGTCCGTGGGGGACCTGTTGTAGTTCCTCGGATCTCAGATATTGGACACATAAATAGGCGCGGTACTTGA 420 0.4333 MNNNLAFLARSVATKFHSPSPLRIYCSSSSESSPPSSNKLFVGGLSWSVDEKSLKDAFASFGEVTEVRIAYDKDSGRSRGFGFVLFSDEDNAKTAKDAMDGKALLGRPLRINFALEKVRGGPVVVPRISDIGHINRRGT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2464 139 Gene3D - 15 119 IPR012677 -
Alju08g2464 139 SUPERFAMILY RNA-binding domain, RBD 28 122 IPR035979 GO:0003676
Alju08g2464 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 117 - -
Alju08g2464 139 SMART rrm1_1 39 112 IPR000504 GO:0003723
Alju08g2464 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Alju08g2464 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Alju08g2464 139 CDD RRM2_NsCP33_like 39 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2464 Alju-ChrAlju08 33520966 33523412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2464 36 117 C2H2 Transcription Factor Family AT2G19380 36.585 3.85e-13 63.5