Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2274 ATGGCTCATAGGTTGCTGAGGGATCATGAAGCAGATGGTTGGGAACGATCTGACTTTCCTATTATATGCGAATCATGCCTCGGTGACAACCCATATGTTCGTATGACAAGAGCTGAGTATGATAAGGAGTGTAAGATTTGTACACGGCCCTTTACTGTTTTCCGATGGAGACCTGGTCGAGATGCAAGATATAAAAAAACTGAAATATGCCAAACATGTAGTAAATTGAAAAACGTTTGTCAAGTCTGCCTTCTGGATCTTGAGTACGGGTTACCGGTTCAAGTCCGAGATACAGCTCTCAGCATCAGTTCCCATGATGCCATTCCAAAGAGTGATGTTAATCGTGAGTATTTTGCTGAAGAACACGATCGCAAGACTCGAGCTGGCTTGGATTATGAATCCTCGTATGGGAAAGCACGTGCAAATGATACTATTTTGAAGCTTCAAAGGACAACACCATACTACAAAAGAAACCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGCCCATATAGGCATGAGATGCCAGTGACTGGGGAGTTGTCACAGCAAAATATCAAAGATCGTTATTATGGGGTGAACGATCCTGTAGCATTAAAGTTACTTGGCAAGGCAGGAGAGATGACATCTCTGGAACCTCCAGAGGATGAGACCATTAGAACTCTTTATGTTGGTGGGCTTGATGCTCGGGTCAGTGAGCAGGACCTACGCGATCACTTTTATGCACATGGCGAAATAGAATCCATCAAGATGGTGCTCCAACGGGCTTGTGCTTTTGTATCCTACACAACCAGAGAAGGTGCAGAAAAAGCAGCAGAAGAGCTCTCCAACAAGCTAGTTATCAAGGGCCTAAGGTTGAAGCTAATGTGGGGTAGACCGCAGATGGCAAAACCTGAGTCTGAAAGTTCTGATCAAGCAAAGCAGCAGGCATCTGTGGCTCACAGTGGATTGTTGCCTCGAGCCGTCATATCACAGCAGCAGAGCCAGGATCAAACCCAGGGAGCTCATTACTATAACATTCCACCTCCTCCTCAGCAAGACAGAAGCTATTATCCATCAATGGATCCTCAGAGAATGGGTGCTGTTATTCCGTCCCAAGATGGTGGTCCTCCTGGTGGGGCCACAGTGACCGGAGAGAACAACAAACCGAATTTGGAGAAGCAGCAAATTCAGCATTTTGCCCATCCAATGATGCCTCCTCCACCTGGACAATATCACCATCATCAGTATTATCCCCCTCCCCCTTATGGTTATATGCCACCTGTACCTGGTTATCAACAGTACCCACCACCATACAACACCGGGATGTCTACACCTCAGCCGCCGGCAGCAAACCAGCCATATCACCAATCCATGCAACCGGGTTCGTCTGCTGCTCCCTCTGGGTCGGCACCAACGGGATTAGGACCAGCTGGTGGTTCTGCACCTGCAGAAGCTGGCACATCAACCTCGGCCTCACAGTAG 1488 0.4772 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKTRAGLDYESSYGKARANDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDETIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVSYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQMAKPESESSDQAKQQASVAHSGLLPRAVISQQQSQDQTQGAHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQDGGPPGGATVTGENNKPNLEKQQIQHFAHPMMPPPPGQYHHHQYYPPPPYGYMPPVPGYQQYPPPYNTGMSTPQPPAANQPYHQSMQPGSSAAPSGSAPTGLGPAGGSAPAEAGTSTSASQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2274 495 SUPERFAMILY RNA-binding domain, RBD 221 307 IPR035979 GO:0003676
Alju08g2274 495 MobiDBLite consensus disorder prediction 438 471 - -
Alju08g2274 495 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Alju08g2274 495 Gene3D - 149 209 - -
Alju08g2274 495 MobiDBLite consensus disorder prediction 435 495 - -
Alju08g2274 495 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Alju08g2274 495 Gene3D - 212 311 IPR012677 -
Alju08g2274 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Alju08g2274 495 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 378 IPR039171 GO:0003723
Alju08g2274 495 Pfam Torus domain 136 194 IPR032297 -
Alju08g2274 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Alju08g2274 495 MobiDBLite consensus disorder prediction 302 321 - -
Alju08g2274 495 MobiDBLite consensus disorder prediction 306 320 - -
Alju08g2274 495 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Alju08g2274 495 MobiDBLite consensus disorder prediction 332 389 - -
Alju08g2274 495 CDD RRM_RBM22 227 300 - -
Alju08g2274 495 SMART rrm1_1 229 297 IPR000504 GO:0003723
Alju08g2274 495 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Alju08g2274 495 MobiDBLite consensus disorder prediction 332 347 - -
Alju08g2274 495 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2274 Alju-ChrAlju08 27040788 27044692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2274 229 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.848 3.99e-06 47.8