Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2219 ATGGAAATTTCGACTTTCCACCATCTCCCGACTTCACTCTGGATAGTCTTTTTTAGGGTTTTTGTCTCGCGGCTTTCTCTCATTCACTGTGACTGGATGGATTCGTTTGAGCCAAATGGAAATGGGAATGACGACAGTTTACCACCACCACCTCCTCCTCCTGAAGTCCCGCCAAATGTTGTTCCTGTGAAAGCGGAAGAGATCCCTCCTGAACCGGTTAAGAAGAAGCCTTCTCGAGTTCCAATAGCCAGACGGGGCTTGGGATCCAAAGGGAGTAAACTGCAACTTCTCACCAATCATTTCAAAGTTGATGTCAATAACAAGGATGGTCATTTCTTCCATTACAGTGTAGCACTTTTTTATGAAGATGGGCGACCTGTGGAAGGTAAGGGTGTTGGAAGAAAAGTAATTGATAGGGTGCAGGAGACTTACTCTTCTGAATTAGCGGGAAAAGACTTTGCCTATGATGGCGAGAAGAGTTTGTTTACTGTTGGATCTCTTCCTCGAAACAAACTTGAGTTTACGGTAGTTCTTGAGGATGTCATATCAAACAGAAATAATGGAAATTGCAGCCCTGATGGTAATGGAAGTCCAAATGAGGGTGACAGGAAGAGGATGCGACGCCCAAATCGGGCAAAAACATTCAAAGTGGAGATTAGCTTTGCTGCAAAGATTCCTATGCAGGCCATTGCCAATGCATTACGTGGGCAGGAGACTGAGAATTTTCAAGAAGCCATAAGAGTTCTTGATATTATATTGAGGCAAAATGCTGCTAAGAAAGGCTGTCTTCTTGTTCGGCAATCCTTCTTCCACAATGATCCAATGAATTTTGCTGACGTGGGCGGCGGTGTTCTCGGCTGTCGAGGTTTTCATTCAAGTTTTAGGACCACACAGAGTGGCTTATCCCTCAATATTGATGTATCTACCACAATGATAATACAACCTGGGCCTGTGGTGGATTTCTTAATTGCCAACCAAAACGTGAGAGATCCTTATTCCCTTGACTGGGCCAAGGCTAAGAAGACTCTGAAGAATTTGAGGATTACAACAAGCCCATCCAATCAAGAGTACAAGATATGTGGGCTCAGTGAACTCCCATGTCGTCAGCAGACGTTTACTCTCAAGGGTAAGGGTGGTGATGATGGTGCAGAGGAAATAACTGTTTTTGATTATTTTGTGAAATATCGTAATATAGAGCTTCGGTATTCTGGTGATATGCCTTGCATTAATGTTGGAAAGCCAAAACGCCCAACTTATTTTCCCATTGAGCTTTGCTCTTTGGTATCCCTGCAACGTTATACAAAGGCCCTTACTACACTACAAAGGGCGTCATTGGTTGAAAAGTCTCGGCAGAAGCCACAAGAAAGAATGAGGGTTTTATCTGATGTTTTAAAAGTCAGCAAGTATGATTCTGATCCTATGCTACATAGTTGTGCTGTTCGAATAAATACCGGTTTTACACAGGTTGATGGCCGTGTTCTACCAGCCCCAAGGTTGAAGTTTGGCAATGGAGAAGAATTCAATCCAAGAAATGGGAGGTGGAATTTTAACAATAAGACATTTGCGCAGCCAACAAAGATAGAGCGATGGGCCGTGGCAAACTTTTCTGCACGTTGTGATGTGAAATCTCTTGTTAAGGATCTGATTAGATGTGCTGGAAATAAAGGAATTCATATAGATGCCCCATTTGATGTATTTGAGGAAAGTCCACAGTTTAGGCGTGCCCCACCTATGGTCAGAGTGGATAAGATGTTCGAAGATATACAGTCGAAACTTCCTGGAGCTCCTCAGTTCCTTCTCTGTCTTCTTCCAGAGCGGAAAAATTGTGATATTTATGGTCCCTGGAAAAAGAAGAATCTTGCTGACTTTGGGATTATCAATCAGTGCATGTGTCCACAGAGGGTCAATGACCAATATCTGACCAATGTGTTGTTAAAAATCAATGCTAAGCTAGGTGGGATAAATTCATTTTTATCTGTTGAAAAAACTTCTTCTATCCCCATTGTTTCCAAAGCTCCTACCATTGTCCTTGGGATGGACGTGTCACATGGTTCACCTGGCCAGACAGATATTCCTTCCATTGCAGCGGTGGTGAGCTCCAGACAGTGGCCTTTGATCTCAAAGTATCGGGCATGTGTTCGAACTCAATCTCCTAAGGTTGAAATGATCGATAATCTGTTCAAGCCTGTAGGTGAAAAGGAAGACGAGGGCATTATCAGGGAACTTTTGGTTGACTTCTATCAAAGTTCTGGGAATAGAAAGCCTGACAATATAATAATATTCAGGGATGGGGTTAGCGAATCGCAGTTCACTCAAGTTTTAAACATCGAGCTTAGTCAAATCATTGAGGCCTGTAAATTCCTTGATGAACAGTGGAACCCCAAATTTGTGGTGATTGTGGCTCAGAAAAACCACCACACCAAATTTTTCCAGAATGGTTCTCCTGATAATGTTCCCCCTGGAACTATTATTGACAACAAAATCTGTCATCCCCGAAATTATGATTTCTACTTGTGCGCACATGCTGGAATGATTGGAACCACTAGGCCCACACATTACCATGTTCTGTTAGATGAGGTTGGTTTCTCTGCGGATGATCTACAGGAACTGGTGCATTCTTTGTCATATGTGTATCAGAGGAGCACCACTGCCATATCTGTTGTCGCTCCGGTCTGTTATGCTCACCTGGCGGCAACTCAGCTTGGACAGTTCATGAAATTCGAGGACAAGTCTGACACTTCGAGCCATGGCGGCCAGTCTTCTGCCTCTGGTGGTGGTGCTGTTCCTCAGTTGCCACCACTGCAGGAAAATGTCTGCAACTCCATGTTCTTCTGTTGA 2838 0.4355 MEISTFHHLPTSLWIVFFRVFVSRLSLIHCDWMDSFEPNGNGNDDSLPPPPPPPEVPPNVVPVKAEEIPPEPVKKKPSRVPIARRGLGSKGSKLQLLTNHFKVDVNNKDGHFFHYSVALFYEDGRPVEGKGVGRKVIDRVQETYSSELAGKDFAYDGEKSLFTVGSLPRNKLEFTVVLEDVISNRNNGNCSPDGNGSPNEGDRKRMRRPNRAKTFKVEISFAAKIPMQAIANALRGQETENFQEAIRVLDIILRQNAAKKGCLLVRQSFFHNDPMNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPYSLDWAKAKKTLKNLRITTSPSNQEYKICGLSELPCRQQTFTLKGKGGDDGAEEITVFDYFVKYRNIELRYSGDMPCINVGKPKRPTYFPIELCSLVSLQRYTKALTTLQRASLVEKSRQKPQERMRVLSDVLKVSKYDSDPMLHSCAVRINTGFTQVDGRVLPAPRLKFGNGEEFNPRNGRWNFNNKTFAQPTKIERWAVANFSARCDVKSLVKDLIRCAGNKGIHIDAPFDVFEESPQFRRAPPMVRVDKMFEDIQSKLPGAPQFLLCLLPERKNCDIYGPWKKKNLADFGIINQCMCPQRVNDQYLTNVLLKINAKLGGINSFLSVEKTSSIPIVSKAPTIVLGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKPVGEKEDEGIIRELLVDFYQSSGNRKPDNIIIFRDGVSESQFTQVLNIELSQIIEACKFLDEQWNPKFVVIVAQKNHHTKFFQNGSPDNVPPGTIIDNKICHPRNYDFYLCAHAGMIGTTRPTHYHVLLDEVGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAATQLGQFMKFEDKSDTSSHGGQSSASGGGAVPQLPPLQENVCNSMFFC 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2219 945 SMART DUF1785_2 263 315 IPR014811 -
Alju08g2219 945 MobiDBLite consensus disorder prediction 187 209 - -
Alju08g2219 945 SUPERFAMILY PAZ domain 310 469 IPR036085 GO:0005515
Alju08g2219 945 Gene3D paz domain 309 433 - -
Alju08g2219 945 Pfam Argonaute linker 1 domain 265 313 IPR014811 -
Alju08g2219 945 SUPERFAMILY Ribonuclease H-like 582 904 IPR012337 -
Alju08g2219 945 FunFam Protein argonaute 3 666 945 - -
Alju08g2219 945 FunFam Protein argonaute 7 310 433 - -
Alju08g2219 945 CDD Piwi_ago-like 473 900 IPR045246 -
Alju08g2219 945 MobiDBLite consensus disorder prediction 39 61 - -
Alju08g2219 945 Pfam Piwi domain 599 906 IPR003165 GO:0003676
Alju08g2219 945 Pfam Argonaute linker 2 domain 455 501 IPR032472 -
Alju08g2219 945 Gene3D - 665 945 IPR036397 GO:0003676
Alju08g2219 945 MobiDBLite consensus disorder prediction 44 61 - -
Alju08g2219 945 ProSiteProfiles PAZ domain profile. 340 429 IPR003100 GO:0005515
Alju08g2219 945 Pfam Mid domain of argonaute 508 589 IPR032473 -
Alju08g2219 945 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 73 908 - -
Alju08g2219 945 SMART Piwi_a_2 598 906 IPR003165 GO:0003676
Alju08g2219 945 MobiDBLite consensus disorder prediction 909 929 - -
Alju08g2219 945 Pfam N-terminal domain of argonaute 93 253 IPR032474 -
Alju08g2219 945 CDD PAZ_argonaute_like 315 428 - -
Alju08g2219 945 Gene3D - 493 659 - -
Alju08g2219 945 ProSiteProfiles Piwi domain profile. 598 906 IPR003165 GO:0003676
Alju08g2219 945 Pfam PAZ domain 319 445 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2219 Alju-ChrAlju08 25258941 25267808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2219 84 945 Eukaryotic Initiation Factors Gene Family AT5G43810 35.906 1.02e-165 508