Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2178 ATGGGCTCGAGTGCATTATTGCTGTTGAAACTAGCCTTCTTGGCGGCCTACTACACGCCGGTGGCGGTGCCAGCTCCGCCACGGCCCGCACATTGCATTAAAAAGTGCGGGAACGTGGATATCTCCTATCCCTTTGGCACCAAGGAAGATCGCTGCTTCAAAGATCGTGATTTTCAAATAAACTGCAAACACAACTCTTCTAACGGACACAGCATTCCGTACCTAGCAACAGAAACCTATGACGATCACCTCATCGAGGTTCTCAAAATCTCTGAGGATACTAGTGAGATTTATGTCTCTATGCCTGTTTCTCATGTTTGCTACGATCTCCAAAATAGCAGGGGTGACCATCAGTGGGATCGTTTTCAGATGCCTTCCAAGTTTGGCATATCCAATAAAAAGAACAAGTTCTTTGTACAAGGCTGTGAAACCTACGCGTTCCTCTATGATCATAAAGGAAAAGGACTTAGCGGCTGCGACGCGAGGTGCAGTGACGACGAGAGTTCTTCAGTGACGAGTAATAATGGAACGTGCCAGAGTGATTTTGCGCAAGCCGTTGCAAATTATACTATTAATATTATCTTTTACGATGGATTCGACGAGAGTAATTCATCAGCGCAGAGGTGCAGCTATGCATTTGTTGCACAGATCGGATCTTTCAACTATTCCGACGACAAGGACCTCAATAAGACAGGAGAAACTAATAGATCTACGGTAGTTCTCGATTGGGCTGTTAATAATACGAATTCATGTGGTGGAGCCTGCAAAGGTAATAATACTGAATGCGTTGAATCAGAAAGTGTCAGGGACCACTACTTCTGCAGATGTAAACAAGGGTTCCAAGGCAACCCCTATAGGGACGATGGCTGCAAAGATGTGGATGAGTGCCAGGACAGCAACTTAAATAAGTGCTTGCATCCGAAGCTTTGCCGAAATACGGATGGAGACTACAAATGTTTGTGTCCACGTGGACAAAAAGGCAATGGCCGCGATGAAACTGTAGGAGGCTCAGGCTGCAGCCCTATCATCACAATTCCATTAGTTGTTACTATAGCTTTGTTGGGTGTCTTCACACTGCTCTTCATATTATGTTGGGCACACAAGCAAAGAACTTTGAAACAACTCAGACTGAGAAACTTTGAGCAAAATGGTGGAAACTTGCTTCTACAACAACTTTCACAACAACAAAGATACACTGACAAAACTAGAATATTTACAGAAGTTGAGCTTAAGAATGCCACAAACAACTTCAATGAAACTAGGATTCTTGGTCGTGGAGGACAAGGCACAGTTTATAAAGCTACAGAAACTGCTGGAGCCATTTCATATTTACACTCTTCTGCTTCTATTCCAATTATCCATCGTGATATTAAATCTGCAAATATACTTTTAGACCACAACGACTCAGCAAAGGTATCTGATTTTGGAGCTTCAAGACTTGTCTATCTTGATGAAGTTCAAGTTTCCACTGTGATTCAGGGAACAATAGGATACCTAGATCCAGAGTATCTTCAGACAGGTCAGTTGAATGAGAAGAGTGATGTTTATAGTTTTGGGATTGTACTTGTGGAGCTACTCACCGGGAATAAAGCTTTTGAATTCAATACATTGGCTAAGTATTTTGTGTCTTCAATGAGAGAAGACCGCTTGTGGGAAATTCTTGATAAACGAGTGCTGGACCAGAAGAAGAATGCAATGATGTTGAAGGAAGTTGCCTCATTGGCAAAAAGATGCATTAGAGTTATTGGAGAGGAAAGACCAACCATGAAGGAAGTCGCAATGGAGTTAGAAGGTCTGATGGCAATGGGAAAGCATCTACAAGAGAACGGCAAGGATATGATGGTAGAAGAAAGTGAATACTTATTGGGATATTGTCCAAATAAAGATGGATATGGGAGTACCAGTGCTAGTTTTTCAGTTACTAGCGGCCATGATAGCATACAAAAGCATGCAACATTTGATATTATAGATGGGGGCAGATGA 1983 0.4241 MGSSALLLLKLAFLAAYYTPVAVPAPPRPAHCIKKCGNVDISYPFGTKEDRCFKDRDFQINCKHNSSNGHSIPYLATETYDDHLIEVLKISEDTSEIYVSMPVSHVCYDLQNSRGDHQWDRFQMPSKFGISNKKNKFFVQGCETYAFLYDHKGKGLSGCDARCSDDESSSVTSNNGTCQSDFAQAVANYTINIIFYDGFDESNSSAQRCSYAFVAQIGSFNYSDDKDLNKTGETNRSTVVLDWAVNNTNSCGGACKGNNTECVESESVRDHYFCRCKQGFQGNPYRDDGCKDVDECQDSNLNKCLHPKLCRNTDGDYKCLCPRGQKGNGRDETVGGSGCSPIITIPLVVTIALLGVFTLLFILCWAHKQRTLKQLRLRNFEQNGGNLLLQQLSQQQRYTDKTRIFTEVELKNATNNFNETRILGRGGQGTVYKATETAGAISYLHSSASIPIIHRDIKSANILLDHNDSAKVSDFGASRLVYLDEVQVSTVIQGTIGYLDPEYLQTGQLNEKSDVYSFGIVLVELLTGNKAFEFNTLAKYFVSSMREDRLWEILDKRVLDQKKNAMMLKEVASLAKRCIRVIGEERPTMKEVAMELEGLMAMGKHLQENGKDMMVEESEYLLGYCPNKDGYGSTSASFSVTSGHDSIQKHATFDIIDGGR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2178 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Alju08g2178 660 Gene3D Laminin 244 334 - -
Alju08g2178 660 CDD EGF_CA 292 327 - -
Alju08g2178 660 SUPERFAMILY EGF/Laminin 292 330 - -
Alju08g2178 660 FunFam Fibrillin 2 287 332 - -
Alju08g2178 660 SMART egfca_6 292 340 IPR001881 GO:0005509
Alju08g2178 660 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 434 600 IPR045274 GO:0007166
Alju08g2178 660 SMART serkin_6 348 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g2178 660 FunFam Wall-associated receptor kinase 2 429 619 - -
Alju08g2178 660 SMART egf_5 295 340 IPR000742 -
Alju08g2178 660 SMART egf_5 250 291 IPR000742 -
Alju08g2178 660 Pfam Protein kinase domain 436 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g2178 660 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Alju08g2178 660 SUPERFAMILY Protein kinase-like (PK-like) 403 602 IPR011009 -
Alju08g2178 660 Pfam Wall-associated receptor kinase galacturonan-binding 32 99 IPR025287 GO:0030247
Alju08g2178 660 Pfam Calcium-binding EGF domain 292 331 IPR001881 GO:0005509
Alju08g2178 660 Gene3D Phosphorylase Kinase; domain 1 390 438 - -
Alju08g2178 660 ProSitePatterns Calcium-binding EGF-like domain signature. 292 319 IPR018097 GO:0005509
Alju08g2178 660 ProSiteProfiles EGF-like domain profile. 292 331 IPR000742 -
Alju08g2178 660 ProSiteProfiles EGF-like domain profile. 247 291 IPR000742 -
Alju08g2178 660 Gene3D Transferase(Phosphotransferase) domain 1 439 622 - -
Alju08g2178 660 ProSiteProfiles Protein kinase domain profile. 317 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2178 Alju-ChrAlju08 23836275 23842884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2178 1 658 Receptor kinase-like Gene Family AT1G21230 30.452 3.42e-81 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Alju08g2178 Pkinase 2.9e-29 CL0016