Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2163 ATGATTCTGAACGCGCAAAACATTTTGTCCGATGATTACTCGTTGCTGATTGGGTCGAACAGGTCTTCTTCTGCACTCTTTTTAACTCTCTCTGCCTTCCTTGGTTCGGGGTTTGGGATTTCACGGTTCTATGCCTCGAATCTTATTCTGTATTTAGATTTCTCGTCTTTCATTTTTCTCCCCAAATCCTTTGGTAAGTTAATCCGATTGTGTGAGTTTGAAGTTCTTCTGGTCCTTGGGGTAGATGGATTTCGGTTAATTGCTTCGTTCTTAGGTTTTGGAATCCCTAATTTGAAAGTTTTGTGCCATGGGATAATGTTTGGTTTTGTCTGGAATTATATTCCCATAAAGGGAAACCATATTTTCGTTGAATTTTCTGAAAGAACAACTTGTGAAAGAGAAGGGATGTCAAGTGGAGCAACGCACTGGTGTTATGCGTGCAGACGGGAAATCATACCTGAAGGGAGAGATTTCACATGCCCTTATTGTGATGGGGGCTTTGTGGTAGAACTTGACGAAATGCAAAGAACGGCACACGTGGAGGATTTTCATCAAGTACCTGACATTTTTGGTGCCATTCATGCTGTTATGGGGAGGAGATTCCCAGAAACAAGATATCTAGATTCAGTTGATAATATCCTGAGGCAGAGAATGGCTGGACGAAACCCAAACTTTGATGTTAGAGGGCGATCTATATCTGCCATTGGTCCTGATCAGAGTTGGGGTTTTATTAGTTCTGGTCCTTACTTGATATTTCATGGTCAGGTTCCTGGATTCACTTTGACTAATGGCATCCCTAGAGGCGGTCCTAGGCGTGTTGATGTTAGTGACTACTTCATGGGGCCTGGACTGGAAGAAATTATTGAACAGCTTACTATGAATGACCGGCACGGTCCGCCCCCAGCCTCACGTTCTTCAATTGATGCAATGCCTATCATAACAATCACACCGGCTCATCTTCGTTCTGACTCTCAATGTCCCGTTTGTCAAGACAAATTCGAACTTGGCTCTGAGGCGAGGGCGATGCCATGTAGCCATATTTATCATTCTGATTGTATTGTTCCTTGGTTGGTTCAACATAACTCATGCCCTGTTTGCCGTGTTGAGTTGCCAGCTCATGGACAGGTTAATCCTCATGCTAATCGTAATTTGGGAGGAAGTAATGCAGAAAGCACCAACAATGATAGCCTTAGGGAGAGAGAGAATAGCCAGCAGAACCAAGGAAGGAGAAACCCGTTTTCGTTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACAGTAATAATCAAAATGCTGAGACCAGAGGAAGCAATAATTCTTCAAACAATCGTGACCAGAATAGTAATGGAACGAACCATAGCCAATGGCGCTTTGATGAATGA 1380 0.4319 MILNAQNILSDDYSLLIGSNRSSSALFLTLSAFLGSGFGISRFYASNLILYLDFSSFIFLPKSFGKLIRLCEFEVLLVLGVDGFRLIASFLGFGIPNLKVLCHGIMFGFVWNYIPIKGNHIFVEFSERTTCEREGMSSGATHWCYACRREIIPEGRDFTCPYCDGGFVVELDEMQRTAHVEDFHQVPDIFGAIHAVMGRRFPETRYLDSVDNILRQRMAGRNPNFDVRGRSISAIGPDQSWGFISSGPYLIFHGQVPGFTLTNGIPRGGPRRVDVSDYFMGPGLEEIIEQLTMNDRHGPPPASRSSIDAMPIITITPAHLRSDSQCPVCQDKFELGSEARAMPCSHIYHSDCIVPWLVQHNSCPVCRVELPAHGQVNPHANRNLGGSNAESTNNDSLRERENSQQNQGRRNPFSFLWPFRSSSSNSNNQNAETRGSNNSSNNRDQNSNGTNHSQWRFDE 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2163 459 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Alju08g2163 459 CDD RING-H2_RNF126-like 325 367 - -
Alju08g2163 459 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 266 371 - -
Alju08g2163 459 FunFam E3 ubiquitin-protein ligase RING1-like 290 373 - -
Alju08g2163 459 SUPERFAMILY RING/U-box 306 373 - -
Alju08g2163 459 Pfam zinc-ribbon 141 171 IPR039525 GO:0061630
Alju08g2163 459 SMART ring_2 326 366 IPR001841 -
Alju08g2163 459 MobiDBLite consensus disorder prediction 406 459 - -
Alju08g2163 459 Pfam Ring finger domain 325 367 IPR001841 -
Alju08g2163 459 MobiDBLite consensus disorder prediction 377 459 - -
Alju08g2163 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 373 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2163 Alju-ChrAlju08 23482770 23485302 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2163 270 384 C3H Transcription Factor Family AT5G01980 40.171 4.70e-24 102