Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2160 ATGAGTTATGAGGAAGCTATCAATGGCTATTTTGGGTTGAGGGAAAGTTTTGATTTCATTTTTTGTCCATTTGCCGGTGAAAAATTCATAAGAGTTGACCTTGGCTATTTGTGTCATGGTTACTCTTCTGCTGCTGTAAATATATGCATATCAACTATAGGGAACTAACTTGATGAGATGCAAAAAACGGCACACATGGAGGATTTTCATCAAGTACCCGACATTTTTGGTGCTATTCATGCTGTTATGGGGAGGAGATTCCCAGAAACAAGATTTCTAGATTCAGTTGATAATATCCCGAGGCAGAGAATGGCTGGACGAAACCCAAACTTTGATGTTAGAGGGCGATCTATATCTGCCATTGGTCCTGAGCAGAGTTGGGGTTTTATTAGTTCTGGTCCTTACTTGATATTTCATGGTCAGGTTCCTGGATTCACTTTGACTAATGGCATCCCTAGAGGCGGTCCTAGGCGTGTTGATGTTAGTGACTACTTCATGGGGCCTGGACTGGAAGAAATTATTGAACAGATCACTATGAATGACCGGCGCGGTCCGCCCCCGGCCTCGCGTTCTTCAATTCATTCAATGCCTACCATAACAATCACACCGGCTCATCTTCGTTCTGACTCTCAATGTCCTGTTTGTCAAGACAAATTCGAACTTGGCTCTGAGGCGAGGGCGATGCCATGTAGCCATATTTATCATTCTGATTGTATTGTTCCTTGGTTGGTTCAACATAACTCATGCCCTGTTTGCCGTGTTGAGTTGCCAGCTCATGGACAGGTTAATCCTCATGCTAGTCGTAATTTGGGAGGAAGTAATGCAGAAAGCACCAACAATGATAGCCTTAGGGAGAGAGAGAATAGCCAGCAGAACCAAGGAAGGAGAAACCCGTTTTCGCTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACAGTAAATAA 942 0.4363 MSYEEAINGYFGLRESFDFIFCPFAGEKFIRVDLGYLCHGYSSAAVNICISTIGNXLDEMQKTAHMEDFHQVPDIFGAIHAVMGRRFPETRFLDSVDNIPRQRMAGRNPNFDVRGRSISAIGPEQSWGFISSGPYLIFHGQVPGFTLTNGIPRGGPRRVDVSDYFMGPGLEEIIEQITMNDRRGPPPASRSSIHSMPTITITPAHLRSDSQCPVCQDKFELGSEARAMPCSHIYHSDCIVPWLVQHNSCPVCRVELPAHGQVNPHASRNLGGSNAESTNNDSLRERENSQQNQGRRNPFSLLWPFRSSSSNSK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2160 313 MobiDBLite consensus disorder prediction 292 313 - -
Alju08g2160 313 SUPERFAMILY RING/U-box 192 259 - -
Alju08g2160 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 259 IPR013083 -
Alju08g2160 313 Pfam Ring finger domain 211 253 IPR001841 -
Alju08g2160 313 CDD RING-H2_RNF126-like 211 253 - -
Alju08g2160 313 FunFam E3 ubiquitin-protein ligase RING1-like 175 259 - -
Alju08g2160 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 257 - -
Alju08g2160 313 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Alju08g2160 313 MobiDBLite consensus disorder prediction 261 313 - -
Alju08g2160 313 SMART ring_2 212 252 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2160 Alju-ChrAlju08 23401169 23402409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2160 156 270 C3H Transcription Factor Family AT5G01980 40.171 3.15e-26 106