Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2039 ATGACTTCAGTCGTGAAGATCGAAGGCGAACAGATCCCAGCCAACGATTTTCTGGATTTGTCCTTCCAAGATAAGACTGAAATGCGAAGTGAAGCAGAGATCCTCCAGGTGGGATCTGAGAACCATGGGGGTTTCTGTGCGATTTGTCTGGATAAGATAGTTCTGCAGGAAACTGCGCTCGTTAAAGGTTGCGAGCATGCTTACTGTGTTACATGCATTCTTCGATGGGCCACATATCGCCCCAAGGCCACCTGCCCGCAATGTAAACATCCATTTGAGTTTCTTAATTTGCATCGTTCACTTGATGGCAGGCTTCATGACTACATGTTTGAGGAAAGTGTCTGCCTACTTCTTAGAGCTTCATGGTTTAAACCTTTGAATGTAGAAGATCATGCTCAGCATGAACAGGTGTATATGTATGATGACCTTGAAGATTATTATTATGAATACGAGGATGAAGATGACTTGGATGAAGCTTATTATGGTGGCTCATCTAGCATCCGCATCGGCAACCGGAGGTGGGGAGACAATGGCTATGTCAGGGCTGGTCGGCAACAAGCTAGGCCGGTCCATCAACATAACTCCCAGAACTCTGGGGCAAGTTCATCCCGTGAGCCAAAGAACAAAGAGGTCGACAGAGGTGCTGCAACTGGACGACGAGCGAAGCGAGCGCAGAAACGGGAGGCGGCTGATAAGGCTGCTGCGGCGAAGCATCAGCAGCATCTAGTGAGGTTGGGAAGGAAGTGA 747 0.4846 MTSVVKIEGEQIPANDFLDLSFQDKTEMRSEAEILQVGSENHGGFCAICLDKIVLQETALVKGCEHAYCVTCILRWATYRPKATCPQCKHPFEFLNLHRSLDGRLHDYMFEESVCLLLRASWFKPLNVEDHAQHEQVYMYDDLEDYYYEYEDEDDLDEAYYGGSSSIRIGNRRWGDNGYVRAGRQQARPVHQHNSQNSGASSSREPKNKEVDRGAATGRRAKRAQKREAADKAAAAKHQQHLVRLGRK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2039 248 Pfam Ring finger domain 46 89 IPR001841 -
Alju08g2039 248 SMART ring_2 46 88 IPR001841 -
Alju08g2039 248 MobiDBLite consensus disorder prediction 183 248 - -
Alju08g2039 248 MobiDBLite consensus disorder prediction 188 204 - -
Alju08g2039 248 SUPERFAMILY RING/U-box 45 95 - -
Alju08g2039 248 MobiDBLite consensus disorder prediction 205 238 - -
Alju08g2039 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 248 - -
Alju08g2039 248 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Alju08g2039 248 CDD RING-HC_Topors 46 92 - -
Alju08g2039 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 109 IPR013083 -
Alju08g2039 248 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2039 1 248 C3H Transcription Factor Family AT5G19430 57.198 1.12e-88 261