Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2038 ATGAAGAGAGTCGTAGTAGATATAGTTGTAATCCCCCCAACATCAACAGCAGCAAAAAAGAAGCACAGAAGAAAGAAAGCAGATTCATCGCAGAACAAGAAACAACAGCAGCAGAAACAGCAGAACCAGAAGAAGAAGAGAATTGTGGCTACCGCAAGGAGGTTGCCTTCTGATTCAGGCGCTTTTGCTGATTGGGTAGCTTCTGCCGCCGGCCGAGCTGTCCCCGCCGACGAGCTCTCACTCGGCTTTAATGCCAGCCCTGCCGCCGCCGCTGCGGCCGTGGGATCCGCCGCTGGTTCCACCTCCGGAATGTGGCCTGGCGCCGCCGCCAGGTCGATCAATTACGGTCTCTCGCAGGATGTGGGAGGCGGCATGCTCGGTCTCCGTGATCTCTACGTGGTGGCTCCGGCGTCGTCGTTTCACCACCACCACCACCACCACCACCATGACCTGTCAGTTATGACCGATCCTCACTCCATGAACAGCTCTAACCCCGCAACAGCGCTTGGCGTCGGCGTTATTCCTCTCCTCACCGCCACGCCATGTCTCAGCCCGGCGAACATAGAGAACAACGAGGCAACAACATTGATGAGTAATCGAAGCCGAGGTGGCGCAATTCAGCTATGGCAAGACCAGGAATCTGAACATTGTCATTATTTGAAGAAACAAGGTACAACAATGTTTGAGCTGAATGATAGTTCCGGGAATCTGGTTCAGAACGAGAATGGATTAACCGTCTCCGCTGCAAACAGCGGTGGCGGAGCCACGTGTCAGGACTGTGGGAACCAAGCGAAGAAGGATTGTAGTTACAGGAGGTGCAGGACTTGCTGTAAGAGTCGGAATTATGACTGCCTTACTCACGTGAAGAGCACGTGGGTGCCGGAATCCCGTCGGAGGGAACGTCGCTTGATGGCCGCTGCTGCGGCCGTGTCAACCCCCGCCGGTGGTGGTGGTGGTGGATCCACCGGTGCTACTTCTGGTGCCAAGAAACCTAGACTCGTCACATCACAACAACAAACCACAACAAATTCTCACACTTCCACTTCTAATACCACTCCTCCTAGAAGCTTCGACACTAGCTCTAGCCACCAAGATGCGGGTTTTAAGGAATCACTACCGGGGCAAGTGCGGGCTCCGGCGGTGTTCAAGTGTGTTCGGGTGACAGCGGTGGATGACGGGCAGGATGAGTTTGCATATCAGGCTACTGTGAAGATTTGTGGTCATGTGTTTAAAGGGTTTCTGTATGATCAAGGGGTTGAAGGTAGAGAGGTGTATCCGAATTTGTCGGAGCTTCATCTTGGTGGCGGCGGCGGCGGCTGTGGCCGAGGTGGTGGTGGAGGAAATGGGGCTTCTTCTTCATCACCAATGCTGGATCCATCTGATGTGTATGTAGCTTCAGGTGGAAGCTTACTTGGAGGAGGATCAACTTATGGAGTGAGTCTGAGGGTTGGAAGTTGTAGAAATGATACTATAATGGGTAACAAATTATGCTTCTGGGGCATTGGTTGTGACTTGGCGAGTGTCGTTTTGTGCGATCTAAAGGCCAAAATGAAATGCTTGGTCATGTGTTCTCTAGTTGCTCTAATAATGTGTAGTTAA 1599 0.5253 MKRVVVDIVVIPPTSTAAKKKHRRKKADSSQNKKQQQQKQQNQKKKRIVATARRLPSDSGAFADWVASAAGRAVPADELSLGFNASPAAAAAAVGSAAGSTSGMWPGAAARSINYGLSQDVGGGMLGLRDLYVVAPASSFHHHHHHHHHDLSVMTDPHSMNSSNPATALGVGVIPLLTATPCLSPANIENNEATTLMSNRSRGGAIQLWQDQESEHCHYLKKQGTTMFELNDSSGNLVQNENGLTVSAANSGGGATCQDCGNQAKKDCSYRRCRTCCKSRNYDCLTHVKSTWVPESRRRERRLMAAAAAVSTPAGGGGGGSTGATSGAKKPRLVTSQQQTTTNSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVDDGQDEFAYQATVKICGHVFKGFLYDQGVEGREVYPNLSELHLGGGGGGCGRGGGGGNGASSSSPMLDPSDVYVASGGSLLGGGSTYGVSLRVGSCRNDTIMGNKLCFWGIGCDLASVVLCDLKAKMKCLVMCSLVALIMCS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2038 532 Pfam Domain of unknown function (DUF702) 254 420 - -
Alju08g2038 532 MobiDBLite consensus disorder prediction 303 372 - -
Alju08g2038 532 MobiDBLite consensus disorder prediction 328 368 - -
Alju08g2038 532 NCBIfam LRP1 C-terminal domain 372 419 IPR006511 -
Alju08g2038 532 MobiDBLite consensus disorder prediction 12 53 - -
Alju08g2038 532 NCBIfam putative zinc finger domain, LRP1 type 256 298 IPR006510 -
Alju08g2038 532 Coils Coil 19 47 - -
Alju08g2038 532 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 139 465 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2038 Alju-ChrAlju08 20374612 20378051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2038 49 462 C2H2 Transcription Factor Family AT5G12330 48.832 1.75e-98 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Alju08g2038 DUF702 3.5e-59 No_clan