Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g2031 ATGGCTTCGGATCTTAGCAGAGCTGGTCCCGTGGAAAGAGACACTGAGCAGGCCATTACTGCATTGAAGAAGGGGGCCTGCTTGGTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCAGATTCGGCTTTCCAATGATGAATCTGCTTTGATATGGTTCTCAGGGAAAGAGGAGAAGCACCTTAAACTAAGCGATATTTCTAGAATTATATCCGGACAACGTACGCCAATCTTTCAAAGGTATCCACGGCCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAGTGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTTAGTGGTTTGAAAGCATTAATATCACGTTTCCATCACCAGAAGTGGAGAACTGAGTCAAGAAGTGATGGTTTTCCATCGGGGGCTAGTAGTCCCAGAACATACACCAGAAGAAGTTCCCCATTAAGTTCTCCATTTAGTAGTAATGAAAGCTTGCAAAAGGACAGTGGGGATCACCTTCGCCTTCATAGTCCCTTTGAGAGCCCCCCTAAGAATGGTTTGGACAAAGCTTTATCTGACGTGATGTTGTATTCTGTTCCTCCAAAGGGTTTCTTCCATCCAGATTCTACTAGTGGTTCAGTCCTCCCAGTGTCATCAGGAGGATCAGATAGTTTACACGGTCACATGAAAGCAATGGGCATGGATGCCTTTAGAGTAAGCCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGACGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACCGGTAATGGTGCTTTGGGTTGTGGGACTCACAATCTTGGTGGAAAAATGGATTCTCTACTGCCCAAGGCCTTGGAATCTGCAGTAGTACTTGATGTACAAAACATAGCTTGTGGTGGACGACATGCCGCCTTGGTGACCAAGCAAGGAGAAATTTTCTCTTGGGGGGAGGAATTAGGAGGCAGGCTTGGGCATGGCGTTGACTCCGATGTTCTTCATCCCAAACTTATAGAATCTCTAAGCAACACCAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACTCTTTCTGGTGATCTTTATACATGGGGCGATGGCACCTACAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTCCCCAAAAAAGTAAATGGGCCTTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGTCCATGGCACACTGCAGTTGTTACCTCTGCTGGGCAATTGTTCACTTTTGGTGACGGTACATTTGGTGTTCTAGGTCATGGGGACAGAAAAAGTGTTACAATACCGAGAGAAGTAGAATCCCTTAAGGGTCTTCGTACTGTGCGAACTGCTTGTGGTGTCTGGCATTCTGCTGCAGTTGTAGAAGTCATGATCGGAAATTCAAGTTCCAGCAACAGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTAGTTCCTACCTGTGTTGCAGCTCTAGTTGAACCTAACTTTTGTCAAGTTGTGTGTGGACAGAGTCTTACTGTCGCACTTACTACCTCAGGCCATGTCTATACCATGGGTAGTCCTGTCTATGGCCAACTAGGAAATCTTGATACTGATGGCAAGTTACCTAAACGTGTTGAAGGAAAGCTCTCGAAGAGTTTTGTGGAAGAGATAGCTTGTGGCGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGCAAGGGTGCAAATGGACGTTTAGGCCATGGGGATATAGAGGATAGAAATACTCCAACATTGGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGCCTCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTCTACCTTTTAATTTCAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGTAAGAAGTCTGTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGGGTCTGTGATAATTGTTATCATAAACTAAGGAAAACTATTGAAACTGATTCTTCATCTCATTCTTCTATGAGCAGAAGAGGAAGTATCAATCAGGGGCCACTTGAGTTTAATGATACAGATGATAAATTTGACTCAAGATCTCGTAATCAGCTTGCTAGGTTTTCTTCAATGCAATCCTTCAAGCAAGTGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTTGAATTCAATAGTAGCCGAGTCTCGCCCATTCCTAACGGAGGTTCCCAGTGGGGGGCATCAAATATTTCTAAATCTGTCAATCCTATTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACATCATAGTCCACCTCGTTCAACAACTCCAACCCCAACACTTGGAGGACTTACCTCCCCAAGGATAGGTGTGGATGATGTTAAGAAGACAAACGATAGCCTTAACCAAGAGATTATTAAATTAAGAGCGCAGGTGGAAAATATGACTCGCAAAACTCAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTGAAGGAAGCAATAGCATATGCTGGTGAAGAAACTGCCAAATCCAAGGCAGCAAAGGAAGTGATCAAGTCGCTTACTAACCAGCTGAAGGAAATGGCTGAGAAGCTTCCTGCTGGAGCATCTAGAAATGTGAAATTTCCTTCTGTTGCTTCCTTTGAATCAAATCCTTGTTCTAATGAAGACATCAATTCTTCTATTGATGGATTAAACATTCAAGCTGCTAGCCTAGAACCAGACTTAGCGGCATTGAACAACCTGTCAGTTTCAAACGGATCAAGTACCATCAGTAATCGAAGTGCAGGCCACAACAAACAGAGCCAGTCAGATGCAACAACAATTAGAAACGGGAGCAGAACAAAGGAAGGTGAGACTCGTGGTGAGGTTGGGTGGGTTGAGCAAGATGAGCCTGGAGTATATATTACATTTACCTCCCTTGGAGGTGTGGTAGATCTTAAGAGAGTTCGTTTCAGTCGAAAGCGGTTTAGTGAGAAGCAAGCAGAACAATGGTGGGCCGAGAATCGGGCAAGAGTATATGAGAAGTACAATGTACGTGTGACTGACAAGTCAGCCATGGACGAAACAATCTGTAAATGA 3288 0.4392 MASDLSRAGPVERDTEQAITALKKGACLVKYGRRGKPKFCQIRLSNDESALIWFSGKEEKHLKLSDISRIISGQRTPIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKDEAEVWFSGLKALISRFHHQKWRTESRSDGFPSGASSPRTYTRRSSPLSSPFSSNESLQKDSGDHLRLHSPFESPPKNGLDKALSDVMLYSVPPKGFFHPDSTSGSVLPVSSGGSDSLHGHMKAMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGNGALGCGTHNLGGKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEELGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKKVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVTIPREVESLKGLRTVRTACGVWHSAAVVEVMIGNSSSSNSSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVVCGQSLTVALTTSGHVYTMGSPVYGQLGNLDTDGKLPKRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDIEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCYHKLRKTIETDSSSHSSMSRRGSINQGPLEFNDTDDKFDSRSRNQLARFSSMQSFKQVESRSSKKNKKFEFNSSRVSPIPNGGSQWGASNISKSVNPIFGSSKKFFSASVPGSRIVSRATSPISRHHSPPRSTTPTPTLGGLTSPRIGVDDVKKTNDSLNQEIIKLRAQVENMTRKTQLQEVELERATKQLKEAIAYAGEETAKSKAAKEVIKSLTNQLKEMAEKLPAGASRNVKFPSVASFESNPCSNEDINSSIDGLNIQAASLEPDLAALNNLSVSNGSSTISNRSAGHNKQSQSDATTIRNGSRTKEGETRGEVGWVEQDEPGVYITFTSLGGVVDLKRVRFSRKRFSEKQAEQWWAENRARVYEKYNVRVTDKSAMDETICK 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g2031 1095 FunFam PH, RCC1 and FYVE domains-containing protein 1 233 480 - -
Alju08g2031 1095 PRINTS Chromosome condensation regulator RCC1 signature 590 611 IPR000408 -
Alju08g2031 1095 PRINTS Chromosome condensation regulator RCC1 signature 372 388 IPR000408 -
Alju08g2031 1095 PRINTS Chromosome condensation regulator RCC1 signature 532 550 IPR000408 -
Alju08g2031 1095 PRINTS Chromosome condensation regulator RCC1 signature 413 429 IPR000408 -
Alju08g2031 1095 PRINTS Chromosome condensation regulator RCC1 signature 429 443 IPR000408 -
Alju08g2031 1095 PRINTS Chromosome condensation regulator RCC1 signature 303 316 IPR000408 -
Alju08g2031 1095 PRINTS Chromosome condensation regulator RCC1 signature 322 338 IPR000408 -
Alju08g2031 1095 CDD FYVE_like_SF 656 709 - -
Alju08g2031 1095 FunFam Putative E3 ubiquitin-protein ligase HERC1 653 721 - -
Alju08g2031 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 320 371 IPR000408 -
Alju08g2031 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 595 646 IPR000408 -
Alju08g2031 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Alju08g2031 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 135 167 - -
Alju08g2031 1095 SMART PH_update 21 125 IPR001849 -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 719 738 - -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 826 849 - -
Alju08g2031 1095 Pfam Transcription factor regulating root and shoot growth via Pin3 1027 1079 IPR013591 -
Alju08g2031 1095 ProSiteProfiles BRX domain profile. 1026 1080 IPR013591 -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 991 1024 - -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 826 859 - -
Alju08g2031 1095 SUPERFAMILY RCC1/BLIP-II 261 648 IPR009091 -
Alju08g2031 1095 SUPERFAMILY PH domain-like 14 122 - -
Alju08g2031 1095 SUPERFAMILY FYVE/PHD zinc finger 648 718 IPR011011 -
Alju08g2031 1095 FunFam PH, RCC1 and FYVE domains-containing protein 1 481 652 - -
Alju08g2031 1095 Pfam FYVE zinc finger 647 713 IPR000306 GO:0046872
Alju08g2031 1095 Coils Coil 913 933 - -
Alju08g2031 1095 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 413 423 IPR000408 -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 719 796 - -
Alju08g2031 1095 Gene3D - 13 131 IPR011993 -
Alju08g2031 1095 Gene3D - 488 657 IPR009091 -
Alju08g2031 1095 Gene3D - 244 487 IPR009091 -
Alju08g2031 1095 Pfam Transcription factor BRX N-terminal domain 908 941 IPR027988 -
Alju08g2031 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 319 IPR000408 -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 991 1013 - -
Alju08g2031 1095 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 929 - -
Alju08g2031 1095 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 306 316 IPR000408 -
Alju08g2031 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 320 368 IPR000408 -
Alju08g2031 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 427 475 IPR000408 -
Alju08g2031 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 262 315 IPR000408 -
Alju08g2031 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 490 539 IPR000408 -
Alju08g2031 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 371 423 IPR000408 -
Alju08g2031 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 542 591 IPR000408 -
Alju08g2031 1095 Pfam Regulator of chromosome condensation (RCC1) repeat 596 643 IPR000408 -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 133 186 - -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 752 767 - -
Alju08g2031 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 427 478 IPR000408 -
Alju08g2031 1095 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 651 713 IPR017455 -
Alju08g2031 1095 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Alju08g2031 1095 Pfam Unstructured region between BRX_N and BRX domain 949 1019 - -
Alju08g2031 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 720 IPR013083 -
Alju08g2031 1095 Coils Coil 857 898 - -
Alju08g2031 1095 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 426 IPR000408 -
Alju08g2031 1095 CDD PH_PLC_plant-like 13 123 - -
Alju08g2031 1095 MobiDBLite consensus disorder prediction 780 796 - -
Alju08g2031 1095 SMART fyve_4 645 714 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g2031 Alju-ChrAlju08 20278327 20287103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g2031 917 1089 Major Intrinsic Protein MIP AT1G31880 34.066 1.38e-13 72.0