Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1992 ATGGTGGAGCAGCACGATGGTGGCATCTTTTTCCTGGTGTGGTCTAGGTTCGCGTGTGTAACTGGATTGAGTGTGTGTGTGTGTGTGTGTGTTGGCATTTTGTGGATTGCATCGGTGATCGTGGATTTGCAACTAGCTATGGAGGTTGATGATGTTGAATGGGCGACGACAAAGAATGAGATGATATGGAATGTTGTGGGTAAGGGACTGCTTATTGGGCAGAAGATTAAGGATGACTTGAGGTGGGTTCCCTCTTGGAATGAAGCTAAAATTAGTTGCAAATTGTTTTTTACCGCAAGAGAGGGTTATTATATACGAGCCCTTCGCTTTGGAACTAATTTAAACTTCCACTTCTGGTTCTTGGAGTATCAGAATTCGCTTCAGTTCAGATTGCCGTTTTGCTTAGCCATGAATTTTCCTGGTTGGAATTTTGAGAATGATGCTTTTGTCACCAATCAAAAGAAGCCCATGGGGCCGGACCAAGAGCTTGTGGAGCTGATATGGCAAAATGGGCAGGTAGTTATGCACAGCCAAACACAAAGAAAACCAGCTGCAAATGCTCTCGACACGAGACAGTTCCAGAAAAATGACCAATCATCAATCCGGGCTAATGAGTCGTACGGGAACTCAAGTCATTTGATTCAAGAAGATGATGCAGTCTCATGGATTCAATATCCACTTGAGGATCCGTTGGAACAACAGCTATGTTCAAACATTTTATCTGATCTGCCATCCTCTGGACTTGAGCCTGACAAGCCAATAAGGCAACTGGAGGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTACCTGCCATGTGACTGCAAGTTCACAAACACCAAATATAAAAGCCTTTTCTCACGAATTATCAGGAAATCCTATGCCTACTCCAAGAGTTCATTTTCCTGATTCAACCCAGAAAAATATTAATTTTGGCGGATCACAAAGTGTCATAAATTTTTCTCAGTTTTCAGAACCCTCCAAAGTAGCCTCAACATCTTCTAATGCACAGTCTCAAGATAAAGGTAATGGTAATCTGTTGCAAAACAAGGGCAAAGAGTGCTCGGTCATGACCGTTGGGTCAAGTCACTGTGGCAGCAACCAAGTCCCTCCAGATCCTGACATTAGCAGGGCATCAAGCAATGGGGTTTGGACTACTGCTTTATATTCTGAGCCTGAACCCCAGAGGGATGGTGTCCAGAAATCAATTCCACTGAGTGAAAAAGGGAAGTCAGAGGTGCTTGAACCAACTTTGAGTTCATCATCAGATGACTCGGGTAGTCTTGCAAAAACTTGCTCCTGGTCTGCTAGAAGCCATGGCCAAAAAAGGAAAAAGATCGATGCAGAAGAATTAGAGGAACAAAGTGAGGCCACAGAACCCAAATCGGCTGTTGAAAACAAGGCAGCTCAGGGGACAAGGCCTTCTCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACATTGCAACAACTCATTCCTCATAGTAACAAGACAGATAAAGCATCAATGTTGGATGAGGCAATTGAGTACTTGAAATCGCTTCAATTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCACCAATGATGTTCCCAGGAATTCAACACTATATGTCCCAAATGGGTATGGGAATGGCTTCGCCTCCTTTTCCGCCTATTCCCAATCCAGTGCAACTACCAAGAACTTCCTTTGATCATTCCATGTCGATGGCTCAGACACCAAACCAGGGTTTGATGCGTCAAGCTCCTGTTATGGGTCCCTTTACTTATCAAAATCAGATGCAAAACCAAGCTTTCTCGGAGCAATGCGCACGTTATATGGGGTATCAATTCATGCAATGTGCCTCCTCTCAGCCGATGAATGGATTTAATTTTGGATCTCAAGTACAACATAGTCAAACAATGATTCCACCCAGCAGTAGCAGTGGACCCTTGAATGGAGCAGTAAATAATGATGATAATTTAAGTGGCAAGATGGGTTAA 2028 0.4393 MVEQHDGGIFFLVWSRFACVTGLSVCVCVCVGILWIASVIVDLQLAMEVDDVEWATTKNEMIWNVVGKGLLIGQKIKDDLRWVPSWNEAKISCKLFFTAREGYYIRALRFGTNLNFHFWFLEYQNSLQFRLPFCLAMNFPGWNFENDAFVTNQKKPMGPDQELVELIWQNGQVVMHSQTQRKPAANALDTRQFQKNDQSSIRANESYGNSSHLIQEDDAVSWIQYPLEDPLEQQLCSNILSDLPSSGLEPDKPIRQLEEGKYVKFGPYSTCHVTASSQTPNIKAFSHELSGNPMPTPRVHFPDSTQKNINFGGSQSVINFSQFSEPSKVASTSSNAQSQDKGNGNLLQNKGKECSVMTVGSSHCGSNQVPPDPDISRASSNGVWTTALYSEPEPQRDGVQKSIPLSEKGKSEVLEPTLSSSSDDSGSLAKTCSWSARSHGQKRKKIDAEELEEQSEATEPKSAVENKAAQGTRPSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSQMGMGMASPPFPPIPNPVQLPRTSFDHSMSMAQTPNQGLMRQAPVMGPFTYQNQMQNQAFSEQCARYMGYQFMQCASSQPMNGFNFGSQVQHSQTMIPPSSSSGPLNGAVNNDDNLSGKMG 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1992 675 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 479 528 IPR011598 GO:0046983
Alju08g1992 675 MobiDBLite consensus disorder prediction 328 485 - -
Alju08g1992 675 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 476 543 IPR036638 GO:0046983
Alju08g1992 675 Gene3D - 475 535 IPR036638 GO:0046983
Alju08g1992 675 SMART finulus 485 534 IPR011598 GO:0046983
Alju08g1992 675 CDD bHLH_AtPIF_like 479 542 IPR047265 -
Alju08g1992 675 MobiDBLite consensus disorder prediction 328 388 - -
Alju08g1992 675 PANTHER TRANSCRIPTION FACTOR PIF3 151 634 IPR044273 GO:0003700|GO:0006355
Alju08g1992 675 MobiDBLite consensus disorder prediction 640 675 - -
Alju08g1992 675 Pfam Helix-loop-helix DNA-binding domain 483 529 IPR011598 GO:0046983
Alju08g1992 675 FunFam Basic helix-loop-helix transcription factor 474 537 - -
Alju08g1992 675 MobiDBLite consensus disorder prediction 413 436 - -
Alju08g1992 675 MobiDBLite consensus disorder prediction 191 210 - -
Alju08g1992 675 MobiDBLite consensus disorder prediction 640 668 - -
Alju08g1992 675 MobiDBLite consensus disorder prediction 440 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1992 Alju-ChrAlju08 18613015 18619301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1992 354 675 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 37.892 4.39e-41 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju08g1992 HLH 2.3e-14 No_clan