Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1978 ATGAAGAACAACTGTCAGCAGAGAAACGGCGTCCGGCAGTACCACAAATCCGAGCTTCCCCGGCTCCGGTGGACGCCGGAACTCCACCGCCACTTTGTTGAAGCTGTTGAAACCCTCGGTGGTCAAGATAAGGCAACACCGAAGAGAATTTTGCAGATGATGCGTGTGAAAGGATTGAGGATTTCCCACGTTAAGAGCCATCTTCAGATGTACAGAAACATGAAGGGGCATTCCATTATGTCACAAGTTCATCATCATCATAATCATCAATCACATAAAGAAAAAGCTCATCAAGCTCGTGCTAATAATGATCTTCATATCTGCTCCATTTGCTTACCCCAAAGATCGCCGGGAGCAAAAGTTTTAACGTCAAAATATAACAACAGTGTCAAGAGAGAACCGCATCCGTTGGGTATCAAAGGGCTTTCACATAGCAGTGAAGAATTTTTTTATGATCTCAATCAGGAGCCTTATACAACGACAAGTACAGATAATAGTGGGACTGCTCCATTTGGTGACCATTCATTCTCTTTTGATCGCACACATCTGCTTCCAGTAAACATCATGCACAGTGTGCAAGAGGAAGAAGACGGCCATGGCGATGACCACGAAAATGAAGAAGAACAAGTCGTTCATGACTCTACTAGTTCAACACAGTCGCTTGGAGGGAATTACATAAACTTAGACCTAACCATTTGA 699 0.4392 MKNNCQQRNGVRQYHKSELPRLRWTPELHRHFVEAVETLGGQDKATPKRILQMMRVKGLRISHVKSHLQMYRNMKGHSIMSQVHHHHNHQSHKEKAHQARANNDLHICSICLPQRSPGAKVLTSKYNNSVKREPHPLGIKGLSHSSEEFFYDLNQEPYTTTSTDNSGTAPFGDHSFSFDRTHLLPVNIMHSVQEEEDGHGDDHENEEEQVVHDSTSSTQSLGGNYINLDLTI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1978 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Alju08g1978 232 MobiDBLite consensus disorder prediction 193 222 - -
Alju08g1978 232 MobiDBLite consensus disorder prediction 193 211 - -
Alju08g1978 232 FunFam Myb family transcription factor 18 76 - -
Alju08g1978 232 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Alju08g1978 232 SUPERFAMILY Homeodomain-like 20 73 IPR009057 -
Alju08g1978 232 Gene3D - 19 76 - -
Alju08g1978 232 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 74 IPR006447 GO:0003677
Alju08g1978 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 5 96 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1978 Alju-ChrAlju08 18189643 18194507 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1978 10 72 G2-like Transcription Factor Family AT1G14600 74.603 9.11e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju08g1978 Myb_DNA-binding 1.4e-07 CL0123